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Items: 1 to 20 of 89

1.

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.

VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, Bassil NV.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy094.

2.

Climate-smart crops with enhanced photosynthesis.

Jansson C, Vogel J, Hazen S, Brutnell T, Mockler T.

J Exp Bot. 2018 Jul 18;69(16):3801-3809. doi: 10.1093/jxb/ery213.

PMID:
30032188
3.

High density SNP mapping and QTL analysis for time of leaf budburst in Corylus avellana L.

Torello Marinoni D, Valentini N, Portis E, Acquadro A, Beltramo C, Mehlenbacher SA, Mockler TC, Rowley ER, Botta R.

PLoS One. 2018 Apr 2;13(4):e0195408. doi: 10.1371/journal.pone.0195408. eCollection 2018.

4.

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data.

Jibran R, Dzierzon H, Bassil N, Bushakra JM, Edger PP, Sullivan S, Finn CE, Dossett M, Vining KJ, VanBuren R, Mockler TC, Liachko I, Davies KM, Foster TM, Chagné D.

Hortic Res. 2018 Feb 7;5:8. doi: 10.1038/s41438-017-0013-y. eCollection 2018.

5.

Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla.

VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP.

Nat Commun. 2018 Jan 2;9(1):13. doi: 10.1038/s41467-017-02546-5.

6.

Guidelines for Genome-Scale Analysis of Biological Rhythms.

Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB.

J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3.

7.

Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases.

Begemann MB, Gray BN, January E, Gordon GC, He Y, Liu H, Wu X, Brutnell TP, Mockler TC, Oufattole M.

Sci Rep. 2017 Sep 14;7(1):11606. doi: 10.1038/s41598-017-11760-6.

8.

Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa.

Greenham K, Guadagno CR, Gehan MA, Mockler TC, Weinig C, Ewers BE, McClung CR.

Elife. 2017 Aug 18;6. pii: e29655. doi: 10.7554/eLife.29655.

9.

High throughput phenotyping to accelerate crop breeding and monitoring of diseases in the field.

Shakoor N, Lee S, Mockler TC.

Curr Opin Plant Biol. 2017 Aug;38:184-192. doi: 10.1016/j.pbi.2017.05.006. Epub 2017 Jul 21. Review.

PMID:
28738313
10.

Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomaeum.

VanBuren R, Wai CM, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D.

Plant Cell Environ. 2017 Oct;40(10):2292-2306. doi: 10.1111/pce.13027.

PMID:
28730594
11.

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple.

Wai CM, VanBuren R, Zhang J, Huang L, Miao W, Edger PP, Yim WC, Priest HD, Meyers BC, Mockler T, Smith JAC, Cushman JC, Ming R.

Plant J. 2017 Oct;92(1):19-30. doi: 10.1111/tpj.13630. Epub 2017 Aug 21.

12.

Comparative Analysis of Vertebrate Diurnal/Circadian Transcriptomes.

Boyle G, Richter K, Priest HD, Traver D, Mockler TC, Chang JT, Kay SA, Breton G.

PLoS One. 2017 Jan 11;12(1):e0169923. doi: 10.1371/journal.pone.0169923. eCollection 2017.

13.

Comprehensive definition of genome features in Spirodela polyrhiza by high-depth physical mapping and short-read DNA sequencing strategies.

Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, McEntee C, Jackson SA, Mockler TC, Zhang W, Lam E.

Plant J. 2017 Feb;89(3):617-635. doi: 10.1111/tpj.13400. Epub 2017 Feb 3.

14.

Grasses suppress shoot-borne roots to conserve water during drought.

Sebastian J, Yee MC, Goudinho Viana W, Rellán-Álvarez R, Feldman M, Priest HD, Trontin C, Lee T, Jiang H, Baxter I, Mockler TC, Hochholdinger F, Brutnell TP, Dinneny JR.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8861-6. doi: 10.1073/pnas.1604021113. Epub 2016 Jul 15.

15.

The genome of black raspberry (Rubus occidentalis).

VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC.

Plant J. 2016 Sep;87(6):535-47. doi: 10.1111/tpj.13215. Epub 2016 Jul 20.

16.

Rapid Synthesis of a Long Double-Stranded Oligonucleotide from a Single-Stranded Nucleotide Using Magnetic Beads and an Oligo Library.

Pengpumkiat S, Koesdjojo M, Rowley ER, Mockler TC, Remcho VT.

PLoS One. 2016 Mar 1;11(3):e0149774. doi: 10.1371/journal.pone.0149774. eCollection 2016.

17.

A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor.

Rhee SY, Parker JE, Mockler TC.

Genome Biol. 2016 Jan 11;17:3. doi: 10.1186/s13059-016-0870-y.

18.

Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus.

Howe GT, Horvath DP, Dharmawardhana P, Priest HD, Mockler TC, Strauss SH.

Front Plant Sci. 2015 Dec 17;6:989. doi: 10.3389/fpls.2015.00989. eCollection 2015.

19.

Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum.

VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, Mockler TC.

Nature. 2015 Nov 26;527(7579):508-11. doi: 10.1038/nature15714. Epub 2015 Nov 11.

PMID:
26560029
20.

Highly sensitive image-derived indices of water-stressed plants using hyperspectral imaging in SWIR and histogram analysis.

Kim DM, Zhang H, Zhou H, Du T, Wu Q, Mockler TC, Berezin MY.

Sci Rep. 2015 Nov 4;5:15919. doi: 10.1038/srep15919.

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