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Items: 14

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High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations.

Giordani L, He GJ, Negroni E, Sakai H, Law JYC, Siu MM, Wan R, Corneau A, Tajbakhsh S, Cheung TH, Le Grand F.

Mol Cell. 2019 May 2;74(3):609-621.e6. doi: 10.1016/j.molcel.2019.02.026. Epub 2019 Mar 25.


Large-Scale Expansion of Human iPSC-Derived Skeletal Muscle Cells for Disease Modeling and Cell-Based Therapeutic Strategies.

van der Wal E, Herrero-Hernandez P, Wan R, Broeders M, In 't Groen SLM, van Gestel TJM, van IJcken WFJ, Cheung TH, van der Ploeg AT, Schaaf GJ, Pijnappel WWMP.

Stem Cell Reports. 2018 Jun 5;10(6):1975-1990. doi: 10.1016/j.stemcr.2018.04.002. Epub 2018 May 3.


Chlamydia trachomatis Strain Types Have Diversified Regionally and Globally with Evidence for Recombination across Geographic Divides.

Smelov V, Vrbanac A, van Ess EF, Noz MP, Wan R, Eklund C, Morgan T, Shrier LA, Sanders B, Dillner J, de Vries HJC, Morre SA, Dean D.

Front Microbiol. 2017 Nov 13;8:2195. doi: 10.3389/fmicb.2017.02195. eCollection 2017.


OMBlast: alignment tool for optical mapping using a seed-and-extend approach.

Leung AK, Kwok TP, Wan R, Xiao M, Kwok PY, Yip KY, Chan TF.

Bioinformatics. 2017 Feb 1;33(3):311-319. doi: 10.1093/bioinformatics/btw620.


Novel Chlamydia trachomatis strains in heterosexual sex partners, Indianapolis, Indiana, USA.

Batteiger BE, Wan R, Williams JA, He L, Ma A, Fortenberry JD, Dean D.

Emerg Infect Dis. 2014 Nov;20(11):1841-7. doi: 10.3201/2011.140604.


ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.

Li JW, Wan R, Yu CS, Co NN, Wong N, Chan TF.

Bioinformatics. 2013 Mar 1;29(5):649-51. doi: 10.1093/bioinformatics/btt011. Epub 2013 Jan 12.


Transformations for the compression of FASTQ quality scores of next-generation sequencing data.

Wan R, Anh VN, Asai K.

Bioinformatics. 2012 Mar 1;28(5):628-35. doi: 10.1093/bioinformatics/btr689. Epub 2011 Dec 13.


Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages.

Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D.

MBio. 2011 May 3;2(3):e00045-11. doi: 10.1128/mBio.00045-11. Print 2011.


Adaptive seeds tame genomic sequence comparison.

Kiełbasa SM, Wan R, Sato K, Horton P, Frith MC.

Genome Res. 2011 Mar;21(3):487-93. doi: 10.1101/gr.113985.110. Epub 2011 Jan 5.


Incorporating sequence quality data into alignment improves DNA read mapping.

Frith MC, Wan R, Horton P.

Nucleic Acids Res. 2010 Apr;38(7):e100. doi: 10.1093/nar/gkq010. Epub 2010 Jan 27.


HAMSTER: visualizing microarray experiments as a set of minimum spanning trees.

Wan R, Kiseleva L, Harada H, Mamitsuka H, Horton P.

Source Code Biol Med. 2009 Nov 20;4:8. doi: 10.1186/1751-0473-4-8.


Predicting phenotype and emerging strains among Chlamydia trachomatis infections.

Dean D, Bruno WJ, Wan R, Gomes JP, Devignot S, Mehari T, de Vries HJ, Morré SA, Myers G, Read TD, Spratt BG.

Emerg Infect Dis. 2009 Sep;15(9):1385-94. doi: 10.3201/eid1509.090272.


A framework for determining outlying microarray experiments.

Wan R, Wheelock AM, Mamitsuka H.

Genome Inform. 2008;20:64-76.

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