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The Mega2R package: R tools for accessing and processing genetic data in common formats.

Baron RV, Stickel JR, Weeks DE.

Version 2. F1000Res. 2018 Aug 29 [revised 2019 Jan 1];7:1352. doi: 10.12688/f1000research.15949.2. eCollection 2018.


Spinning convincing stories for both true and false association signals.

Biedrzycki RJ, Sier AE, Liu D, Dreikorn EN, Weeks DE.

Genet Epidemiol. 2019 Jan 18. doi: 10.1002/gepi.22189. [Epub ahead of print]


DNA methylation in nasal epithelium, atopy, and atopic asthma in children: a genome-wide study.

Forno E, Wang T, Qi C, Yan Q, Xu CJ, Boutaoui N, Han YY, Weeks DE, Jiang Y, Rosser F, Vonk JM, Brouwer S, Acosta-Perez E, Colón-Semidey A, Alvarez M, Canino G, Koppelman GH, Chen W, Celedón JC.

Lancet Respir Med. 2018 Dec 21. pii: S2213-2600(18)30466-1. doi: 10.1016/S2213-2600(18)30466-1. [Epub ahead of print]


Linear mixed models for association analysis of quantitative traits with next-generation sequencing data.

Chiu CY, Yuan F, Zhang BS, Yuan A, Li X, Fang HB, Lange K, Weeks DE, Wilson AF, Bailey-Wilson JE, Musolf AM, Stambolian D, Lakhal-Chaieb ML, Cook RJ, McMahon FJ, Amos CI, Xiong M, Fan R.

Genet Epidemiol. 2019 Mar;43(2):189-206. doi: 10.1002/gepi.22177. Epub 2018 Dec 9.


Interatomic potentials for ground and excited states of Ar+He.

Sharma AR, Weeks DE.

J Chem Phys. 2018 Nov 21;149(19):194302. doi: 10.1063/1.5049661.


Excited interatomic potential energy surfaces of Rb + He that correlate with Rb terms 52S through 72S.

Sharma AR, Weeks DE.

Phys Chem Chem Phys. 2018 Nov 28;20(46):29274-29284. doi: 10.1039/c8cp05550e.


Y chromosome mosaicism is associated with age-related macular degeneration.

Grassmann F, Kiel C, den Hollander AI, Weeks DE, Lotery A, Cipriani V, Weber BHF; International Age-related Macular Degeneration Genomics Consortium (IAMDGC).

Eur J Hum Genet. 2019 Jan;27(1):36-41. doi: 10.1038/s41431-018-0238-8. Epub 2018 Aug 29.


Statistics for X-chromosome associations.

Özbek U, Lin HM, Lin Y, Weeks DE, Chen W, Shaffer JR, Purcell SM, Feingold E.

Genet Epidemiol. 2018 Sep;42(6):539-550. doi: 10.1002/gepi.22132. Epub 2018 Jun 13.


Novel caries loci in children and adults implicated by genome-wide analysis of families.

Govil M, Mukhopadhyay N, Weeks DE, Feingold E, Shaffer JR, Levy SM, Vieira AR, Slayton RL, McNeil DW, Weyant RJ, Crout RJ, Marazita ML.

BMC Oral Health. 2018 Jun 1;18(1):98. doi: 10.1186/s12903-018-0559-6.


Discordant association of the CREBRF rs373863828 A allele with increased BMI and protection from type 2 diabetes in Māori and Pacific (Polynesian) people living in Aotearoa/New Zealand.

Krishnan M, Major TJ, Topless RK, Dewes O, Yu L, Thompson JMD, McCowan L, de Zoysa J, Stamp LK, Dalbeth N, Harré Hindmarsh J, Rapana N, Deka R, Eng WWH, Weeks DE, Minster RL, McGarvey ST, Viali S, Naseri T, Sefuiva Reupena M, Wilcox P, Grattan D, Shepherd PR, Shelling AN, Murphy R, Merriman TR.

Diabetologia. 2018 Jul;61(7):1603-1613. doi: 10.1007/s00125-018-4623-1. Epub 2018 May 2.


Re: "Widespread prevalence of a CREBRF variant among Māori and Pacific children is associated with weight and height in early childhood".

Major TJ, Krishnan M, Topless RK, Dewes O, Thompson J, Zoysa J, Stamp LK, Dalbeth N, Deka R, Weeks DE, Minster RL, Wilcox P, Grattan D, Shepherd PR, Shelling AN, Murphy R, Merriman TR.

Int J Obes (Lond). 2018 Jul;42(7):1389-1391. doi: 10.1038/s41366-018-0025-1. Epub 2018 Mar 6. No abstract available.


Genome-wide association study of maternal genetic effects and parent-of-origin effects on food allergy.

Liu X, Hong X, Tsai HJ, Mestan KK, Shi M, Kefi A, Hao K, Chen Q, Wang G, Caruso D, Geng H, Gao Y, He J, Kumar R, Wang H, Yu Y, Bartell T, Tan XD, Schleimer RP, Weeks DE, Pongracic JA, Wang X.

Medicine (Baltimore). 2018 Mar;97(9):e0043. doi: 10.1097/MD.0000000000010043.


Genome-wide analysis of disease progression in age-related macular degeneration.

Yan Q, Ding Y, Liu Y, Sun T, Fritsche LG, Clemons T, Ratnapriya R, Klein ML, Cook RJ, Liu Y, Fan R, Wei L, Abecasis GR, Swaroop A, Chew EY; AREDS2 Research Group, Weeks DE, Chen W.

Hum Mol Genet. 2018 Mar 1;27(5):929-940. doi: 10.1093/hmg/ddy002.


Joint Analysis of Nuclear and Mitochondrial Variants in Age-Related Macular Degeneration Identifies Novel Loci TRPM1 and ABHD2/RLBP1.

Persad PJ, Heid IM, Weeks DE, Baird PN, de Jong EK, Haines JL, Pericak-Vance MA, Scott WK; International Age-Related Macular Degeneration Genomics Consortium (IAMDGC).

Invest Ophthalmol Vis Sci. 2017 Aug 1;58(10):4027-4038. doi: 10.1167/iovs.17-21734.


Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.

Hong X, Hao K, Ji H, Peng S, Sherwood B, Di Narzo A, Tsai HJ, Liu X, Burd I, Wang G, Ji Y, Caruso D, Mao G, Bartell TR, Zhang Z, Pearson C, Heffner L, Cerda S, Beaty TH, Fallin MD, Lee-Parritz A, Zuckerman B, Weeks DE, Wang X.

Nat Commun. 2017 Jun 9;8:15608. doi: 10.1038/ncomms15608.


Theoretical Cross Sections of the Inelastic Fine Structure Transition M(2P1/2) + Ng ↔ M(2P3/2) + Ng for M = K, Rb, and Cs and Ng = He, Ne, and Ar.

Lewis CD, Weeks DE.

J Phys Chem A. 2017 May 11;121(18):3340-3351. doi: 10.1021/acs.jpca.6b12801. Epub 2017 May 1.


Bivariate Analysis of Age-Related Macular Degeneration Progression Using Genetic Risk Scores.

Ding Y, Liu Y, Yan Q, Fritsche LG, Cook RJ, Clemons T, Ratnapriya R, Klein ML, Abecasis GR, Swaroop A, Chew EY, Weeks DE, Chen W; AREDS2 Research Group.

Genetics. 2017 May;206(1):119-133. doi: 10.1534/genetics.116.196998. Epub 2017 Mar 24.


Genetic risk models: Influence of model size on risk estimates and precision.

Shan Y, Tromp G, Kuivaniemi H, Smelser DT, Verma SS, Ritchie MD, Elmore JR, Carey DJ, Conley YP, Gorin MB, Weeks DE.

Genet Epidemiol. 2017 May;41(4):282-296. doi: 10.1002/gepi.22035. Epub 2017 Feb 15.


An epigenome-wide association study of total serum IgE in Hispanic children.

Chen W, Wang T, Pino-Yanes M, Forno E, Liang L, Yan Q, Hu D, Weeks DE, Baccarelli A, Acosta-Perez E, Eng C, Han YY, Boutaoui N, Laprise C, Davies GA, Hopkin JM, Moffatt MF, Cookson WOCM, Canino G, Burchard EG, Celedón JC.

J Allergy Clin Immunol. 2017 Aug;140(2):571-577. doi: 10.1016/j.jaci.2016.11.030. Epub 2017 Jan 6.


Meta-analysis of quantitative pleiotropic traits for next-generation sequencing with multivariate functional linear models.

Chiu CY, Jung J, Chen W, Weeks DE, Ren H, Boehnke M, Amos CI, Liu A, Mills JL, Ting Lee ML, Xiong M, Fan R.

Eur J Hum Genet. 2017 Feb;25(3):350-359. doi: 10.1038/ejhg.2016.170. Epub 2016 Dec 21.

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