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Items: 1 to 20 of 52


Faster processing of moving compared with flashed bars in awake macaque V1 provides a neural correlate of the flash lag illusion.

Subramaniyan M, Ecker AS, Patel SS, Cotton RJ, Bethge M, Pitkow X, Berens P, Tolias AS.

J Neurophysiol. 2018 Nov 1;120(5):2430-2452. doi: 10.1152/jn.00792.2017. Epub 2018 Aug 22.


Attentional fluctuations induce shared variability in macaque primary visual cortex.

Denfield GH, Ecker AS, Shinn TJ, Bethge M, Tolias AS.

Nat Commun. 2018 Jul 9;9(1):2654. doi: 10.1038/s41467-018-05123-6.


Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.

Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M.

PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May.


Multimodal profiling of single-cell morphology, electrophysiology, and gene expression using Patch-seq.

Cadwell CR, Scala F, Li S, Livrizzi G, Shen S, Sandberg R, Jiang X, Tolias AS.

Nat Protoc. 2017 Dec;12(12):2531-2553. doi: 10.1038/nprot.2017.120. Epub 2017 Nov 16.


Q&A: using Patch-seq to profile single cells.

Cadwell CR, Sandberg R, Jiang X, Tolias AS.

BMC Biol. 2017 Jul 6;15(1):58. doi: 10.1186/s12915-017-0396-0.


In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.

Ouzounov DG, Wang T, Wang M, Feng DD, Horton NG, Cruz-Hernández JC, Cheng YT, Reimer J, Tolias AS, Nishimura N, Xu C.

Nat Methods. 2017 Apr;14(4):388-390. doi: 10.1038/nmeth.4183. Epub 2017 Feb 20.


Developmental broadening of inhibitory sensory maps.

Quast KB, Ung K, Froudarakis E, Huang L, Herman I, Addison AP, Ortiz-Guzman J, Cordiner K, Saggau P, Tolias AS, Arenkiel BR.

Nat Neurosci. 2017 Feb;20(2):189-199. doi: 10.1038/nn.4467. Epub 2016 Dec 26.


Patterned photostimulation via visible-wavelength photonic probes for deep brain optogenetics.

Segev E, Reimer J, Moreaux LC, Fowler TM, Chi D, Sacher WD, Lo M, Deisseroth K, Tolias AS, Faraon A, Roukes ML.

Neurophotonics. 2017 Jan;4(1):011002. Epub 2016 Dec 6.


Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.

Reimer J, McGinley MJ, Liu Y, Rodenkirch C, Wang Q, McCormick DA, Tolias AS.

Nat Commun. 2016 Nov 8;7:13289. doi: 10.1038/ncomms13289.


Response to Comment on "Principles of connectivity among morphologically defined cell types in adult neocortex".

Jiang X, Shen S, Sinz F, Reimer J, Cadwell CR, Berens P, Ecker AS, Patel S, Denfield GH, Froudarakis E, Li S, Walker E, Tolias AS.

Science. 2016 Sep 9;353(6304):1108. doi: 10.1126/science.aaf6102.


Investigating the Limits of Neurovascular Coupling.

Denfield GH, Fahey PG, Reimer J, Tolias AS.

Neuron. 2016 Sep 7;91(5):954-956. doi: 10.1016/j.neuron.2016.08.026.


Benchmarking Spike Rate Inference in Population Calcium Imaging.

Theis L, Berens P, Froudarakis E, Reimer J, Román Rosón M, Baden T, Euler T, Tolias AS, Bethge M.

Neuron. 2016 May 4;90(3):471-82. doi: 10.1016/j.neuron.2016.04.014.


Spike sorting for large, dense electrode arrays.

Rossant C, Kadir SN, Goodman DFM, Schulman J, Hunter MLD, Saleem AB, Grosmark A, Belluscio M, Denfield GH, Ecker AS, Tolias AS, Solomon S, Buzsaki G, Carandini M, Harris KD.

Nat Neurosci. 2016 Apr;19(4):634-641. doi: 10.1038/nn.4268. Epub 2016 Mar 14.


On the Structure of Neuronal Population Activity under Fluctuations in Attentional State.

Ecker AS, Denfield GH, Bethge M, Tolias AS.

J Neurosci. 2016 Feb 3;36(5):1775-89. doi: 10.1523/JNEUROSCI.2044-15.2016.


Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.

Cadwell CR, Palasantza A, Jiang X, Berens P, Deng Q, Yilmaz M, Reimer J, Shen S, Bethge M, Tolias KF, Sandberg R, Tolias AS.

Nat Biotechnol. 2016 Feb;34(2):199-203. doi: 10.1038/nbt.3445. Epub 2015 Dec 21.


Principles of connectivity among morphologically defined cell types in adult neocortex.

Jiang X, Shen S, Cadwell CR, Berens P, Sinz F, Ecker AS, Patel S, Tolias AS.

Science. 2015 Nov 27;350(6264):aac9462. doi: 10.1126/science.aac9462.


Waking State: Rapid Variations Modulate Neural and Behavioral Responses.

McGinley MJ, Vinck M, Reimer J, Batista-Brito R, Zagha E, Cadwell CR, Tolias AS, Cardin JA, McCormick DA.

Neuron. 2015 Sep 23;87(6):1143-1161. doi: 10.1016/j.neuron.2015.09.012. Review.


Random-Access Multiphoton Microscopy for Fast Three-Dimensional Imaging.

Reddy GD, Cotton RJ, Tolias AS, Saggau P.

Adv Exp Med Biol. 2015;859:455-72. doi: 10.1007/978-3-319-17641-3_18. Review.


Improved estimation and interpretation of correlations in neural circuits.

Yatsenko D, Josić K, Ecker AS, Froudarakis E, Cotton RJ, Tolias AS.

PLoS Comput Biol. 2015 Mar 31;11(3):e1004083. doi: 10.1371/journal.pcbi.1004083. eCollection 2015 Mar.


Pupil fluctuations track fast switching of cortical states during quiet wakefulness.

Reimer J, Froudarakis E, Cadwell CR, Yatsenko D, Denfield GH, Tolias AS.

Neuron. 2014 Oct 22;84(2):355-62. doi: 10.1016/j.neuron.2014.09.033. Epub 2014 Oct 22.

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