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Items: 1 to 20 of 146

1.

Determining the Consistency of Resolved Triplets and Fan Triplets.

Jansson J, Lingas A, Rajaby R, Sung WK.

J Comput Biol. 2018 Jul;25(7):740-754. doi: 10.1089/cmb.2017.0256. Epub 2018 Feb 16.

PMID:
29451395
2.

Erratum: An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.

Li S, Koe CT, Tay ST, Tan ALK, Zhang S, Zhang Y, Tan P, Sung WK, Wang H.

Nat Commun. 2017 Oct 31;8(1):1298. doi: 10.1038/s41467-017-01017-1.

3.

An intrinsic mechanism controls reactivation of neural stem cells by spindle matrix proteins.

Li S, Koe CT, Tay ST, Tan ALK, Zhang S, Zhang Y, Tan P, Sung WK, Wang H.

Nat Commun. 2017 Jul 25;8(1):122. doi: 10.1038/s41467-017-00172-9. Erratum in: Nat Commun. 2017 Oct 31;8(1):1298.

4.

Serine peptidase inhibitor Kazal type 1 (SPINK1) as novel downstream effector of the cadherin-17/β-catenin axis in hepatocellular carcinoma.

Shek FH, Luo R, Lam BYH, Sung WK, Lam TW, Luk JM, Leung MS, Chan KT, Wang HK, Chan CM, Poon RT, Lee NP.

Cell Oncol (Dordr). 2017 Oct;40(5):443-456. doi: 10.1007/s13402-017-0332-x. Epub 2017 Jun 19.

PMID:
28631187
5.

BATVI: Fast, sensitive and accurate detection of virus integrations.

Tennakoon C, Sung WK.

BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):71. doi: 10.1186/s12859-017-1470-x.

6.

Enterococcus faecium FC-K Derived from Kimchi Is a Probiotic Strain That Shows Anti-Allergic Activity.

Rho MK, Kim YE, Rho HI, Kim TR, Kim YB, Sung WK, Kim TW, Kim DO, Kang H.

J Microbiol Biotechnol. 2017 Jun 28;27(6):1071-1077. doi: 10.4014/jmb.1611.11020.

7.

Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.

Jansson J, Rajaby R, Shen C, Sung WK.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jan-Feb;15(1):15-26. doi: 10.1109/TCBB.2016.2609923. Epub 2016 Sep 20.

PMID:
27662679
8.

Pan-omics analysis of biological data.

Sung WK.

Methods. 2016 Jun 1;102:1-2. doi: 10.1016/j.ymeth.2016.05.004. Epub 2016 May 11. No abstract available.

PMID:
27179955
9.

Structural variation detection using next-generation sequencing data: A comparative technical review.

Guan P, Sung WK.

Methods. 2016 Jun 1;102:36-49. doi: 10.1016/j.ymeth.2016.01.020. Epub 2016 Feb 1. Review.

PMID:
26845461
10.

Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny.

Maurer-Stroh S, Lee CW, Patel C, Lucero M, Nohynek H, Sung WK, Murad C, Ma J, Hibberd ML, Wong CW, Simões EA.

Diagn Microbiol Infect Dis. 2016 Mar;84(3):203-6. doi: 10.1016/j.diagmicrobio.2015.11.003. Epub 2015 Nov 6.

11.

Fibrillary glomerulonephritis combined with chronic inflammatory demyelinating polyneuropathy.

Sung WK, Jeong JU, Bang KT, Shin JH, Yoo JH, Kim NM, Park JH, Kim JH.

Kidney Res Clin Pract. 2015 Jun;34(2):117-9. doi: 10.1016/j.krcp.2014.10.008. Epub 2015 Mar 26.

12.

An O(m log m)-Time Algorithm for Detecting Superbubbles.

Sung WK, Sadakane K, Shibuya T, Belorkar A, Pyrogova I.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Jul-Aug;12(4):770-7. doi: 10.1109/TCBB.2014.2385696.

PMID:
26357315
13.

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis.

Buisine N, Ruan X, Bilesimo P, Grimaldi A, Alfama G, Ariyaratne P, Mulawadi F, Chen J, Sung WK, Liu ET, Demeneix BA, Ruan Y, Sachs LM.

PLoS One. 2015 Sep 8;10(9):e0137526. doi: 10.1371/journal.pone.0137526. eCollection 2015.

14.

BatAlign: an incremental method for accurate alignment of sequencing reads.

Lim JQ, Tennakoon C, Guan P, Sung WK.

Nucleic Acids Res. 2015 Sep 18;43(16):e107. doi: 10.1093/nar/gkv533. Epub 2015 Jul 13.

15.

Recurrent Fusion Genes in Gastric Cancer: CLDN18-ARHGAP26 Induces Loss of Epithelial Integrity.

Yao F, Kausalya JP, Sia YY, Teo AS, Lee WH, Ong AG, Zhang Z, Tan JH, Li G, Bertrand D, Liu X, Poh HM, Guan P, Zhu F, Pathiraja TN, Ariyaratne PN, Rao J, Woo XY, Cai S, Mulawadi FH, Poh WT, Veeravalli L, Chan CS, Lim SS, Leong ST, Neo SC, Choi PS, Chew EG, Nagarajan N, Jacques PÉ, So JB, Ruan X, Yeoh KG, Tan P, Sung WK, Hunziker W, Ruan Y, Hillmer AM.

Cell Rep. 2015 Jul 14;12(2):272-85. doi: 10.1016/j.celrep.2015.06.020. Epub 2015 Jul 2.

16.

TP53 intron 1 hotspot rearrangements are specific to sporadic osteosarcoma and can cause Li-Fraumeni syndrome.

Ribi S, Baumhoer D, Lee K, Edison, Teo AS, Madan B, Zhang K, Kohlmann WK, Yao F, Lee WH, Hoi Q, Cai S, Woo XY, Tan P, Jundt G, Smida J, Nathrath M, Sung WK, Schiffman JD, Virshup DM, Hillmer AM.

Oncotarget. 2015 Apr 10;6(10):7727-40.

17.
18.

Platform comparison for evaluation of ALK protein immunohistochemical expression, genomic copy number and hotspot mutation status in neuroblastomas.

Yan B, Kuick CH, Lim M, Venkataraman K, Tennakoon C, Loh E, Lian D, Leong MY, Lakshmanan M, Tergaonkar V, Sung WK, Soh SY, Chang KT.

PLoS One. 2014 Sep 4;9(9):e106575. doi: 10.1371/journal.pone.0106575. eCollection 2014.

19.

Do triplets have enough information to construct the multi-labeled phylogenetic tree?

Hassanzadeh R, Eslahchi C, Sung WK.

PLoS One. 2014 Jul 31;9(7):e103622. doi: 10.1371/journal.pone.0103622. eCollection 2014.

20.

CWig: compressed representation of Wiggle/BedGraph format.

Huy Hoang D, Sung WK.

Bioinformatics. 2014 Sep 15;30(18):2543-50. doi: 10.1093/bioinformatics/btu330. Epub 2014 May 27.

PMID:
24867943

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