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Items: 16

1.

De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome.

Munusamy P, Zolotarov Y, Meteignier LV, Moffett P, Strömvik MV.

Sci Rep. 2017 Mar 9;7:43861. doi: 10.1038/srep43861.

2.

The nitrogen responsive transcriptome in potato (Solanum tuberosum L.) reveals significant gene regulatory motifs.

Gálvez JH, Tai HH, Lagüe M, Zebarth BJ, Strömvik MV.

Sci Rep. 2016 May 19;6:26090. doi: 10.1038/srep26090.

3.

Laser Capture Microdissection: Avoiding Bias in Analysis by Selecting Just What Matters.

de Almeida MR, Strömvik MV.

Methods Mol Biol. 2016;1405:109-19. doi: 10.1007/978-1-4939-3393-8_11.

PMID:
26843170
4.

Comparative transcriptional analysis provides new insights into the molecular basis of adventitious rooting recalcitrance in Eucalyptus.

de Almeida MR, de Bastiani D, Gaeta ML, de Araújo Mariath JE, de Costa F, Retallick J, Nolan L, Tai HH, Strömvik MV, Fett-Neto AG.

Plant Sci. 2015 Oct;239:155-65. doi: 10.1016/j.plantsci.2015.07.022. Epub 2015 Jul 29.

PMID:
26398800
5.

The Y-segment of novel cold dehydrin genes is conserved and codons in the PR-10 genes are under positive selection in Oxytropis (Fabaceae) from contrasting climates.

Archambault A, Strömvik MV.

Mol Genet Genomics. 2012 Feb;287(2):123-42. doi: 10.1007/s00438-011-0664-6. Epub 2011 Dec 20.

PMID:
22183143
6.

Transcripts of soybean isoflavone 7-O-glucosyltransferase and hydroxyisoflavanone dehydratase gene homologues are at least as abundant as transcripts of their well known counterparts.

Livingstone JM, Zolotarov Y, Strömvik MV.

Plant Physiol Biochem. 2011 Sep;49(9):1071-5. doi: 10.1016/j.plaphy.2011.06.007. Epub 2011 Jun 25.

PMID:
21741851
7.

PR-10, defensin and cold dehydrin genes are among those over expressed in Oxytropis (Fabaceae) species adapted to the arctic.

Archambault A, Strömvik MV.

Funct Integr Genomics. 2011 Sep;11(3):497-505. doi: 10.1007/s10142-011-0223-6. Epub 2011 Apr 17.

8.

Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.

Fauteux F, Strömvik MV.

BMC Plant Biol. 2009 Oct 20;9:126. doi: 10.1186/1471-2229-9-126.

9.

Application of iTRAQ to catalogue the skeletal muscle proteome in pigs and assessment of effects of gender and diet dephytinization.

Hakimov HA, Walters S, Wright TC, Meidinger RG, Verschoor CP, Gadish M, Chiu DK, Strömvik MV, Forsberg CW, Golovan SP.

Proteomics. 2009 Aug;9(16):4000-16. doi: 10.1002/pmic.200900049.

PMID:
19701905
10.

Recombination analysis of Soybean mosaic virus sequences reveals evidence of RNA recombination between distinct pathotypes.

Gagarinova AG, Babu M, Strömvik MV, Wang A.

Virol J. 2008 Nov 26;5:143. doi: 10.1186/1743-422X-5-143.

11.

Seeder: discriminative seeding DNA motif discovery.

Fauteux F, Blanchette M, Strömvik MV.

Bioinformatics. 2008 Oct 15;24(20):2303-7. doi: 10.1093/bioinformatics/btn444. Epub 2008 Aug 21.

12.

SoyXpress: a database for exploring the soybean transcriptome.

Cheng KC, Strömvik MV.

BMC Genomics. 2008 Aug 1;9:368. doi: 10.1186/1471-2164-9-368.

13.

Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars.

Cheng KC, Beaulieu J, Iquira E, Belzile FJ, Fortin MG, Strömvik MV.

J Agric Food Chem. 2008 May 14;56(9):3057-67. doi: 10.1021/jf073505i. Epub 2008 Apr 23.

PMID:
18433101
14.

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant.

Vodkin LO, Khanna A, Shealy R, Clough SJ, Gonzalez DO, Philip R, Zabala G, Thibaud-Nissen F, Sidarous M, Strömvik MV, Shoop E, Schmidt C, Retzel E, Erpelding J, Shoemaker RC, Rodriguez-Huete AM, Polacco JC, Coryell V, Keim P, Gong G, Liu L, Pardinas J, Schweitzer P.

BMC Genomics. 2004 Sep 29;5:73.

15.

TableView: portable genomic data visualization.

Johnson JE, Stromvik MV, Silverstein KA, Crow JA, Shoop E, Retzel EF.

Bioinformatics. 2003 Jul 1;19(10):1292-3.

PMID:
12835275
16.

A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs.

Strömvik MV, Sundararaman VP, Vodkin LO.

Plant Mol Biol. 1999 Sep;41(2):217-31.

PMID:
10579489

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