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Items: 1 to 20 of 90

1.

Typing tumors using pathways selected by somatic evolution.

Wang S, Ma J, Zhang W, Shen JP, Huang J, Peng J, Ideker T.

Nat Commun. 2018 Oct 8;9(1):4159. doi: 10.1038/s41467-018-06464-y.

2.

[Responses of Soil Ammonia Oxidizers to Simulated Warming and Increased Precipitation in a Temperate Steppe of Inner Mongolia].

Zhang CJ, Shen JP, Sun YF, Wang JT, Yang ZL, Han HY, Zhang LM, Wan SQ, He JZ.

Huan Jing Ke Xue. 2017 Aug 8;38(8):3463-3472. doi: 10.13227/j.hjkx.201702178. Chinese.

PMID:
29964958
3.

Synthetic Lethal Networks for Precision Oncology: Promises and Pitfalls.

Shen JP, Ideker T.

J Mol Biol. 2018 Sep 14;430(18 Pt A):2900-2912. doi: 10.1016/j.jmb.2018.06.026. Epub 2018 Jun 20. Review.

PMID:
29932943
4.

Disruption of NSD1 in Head and Neck Cancer Promotes Favorable Chemotherapeutic Responses Linked to Hypomethylation.

Bui N, Huang JK, Bojorquez-Gomez A, Licon K, Sanchez KS, Tang SN, Beckett AN, Wang T, Zhang W, Shen JP, Kreisberg JF, Ideker T.

Mol Cancer Ther. 2018 Jul;17(7):1585-1594. doi: 10.1158/1535-7163.MCT-17-0937. Epub 2018 Apr 10.

PMID:
29636367
5.

A global transcriptional network connecting noncoding mutations to changes in tumor gene expression.

Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg JF, Ideker T.

Nat Genet. 2018 Apr;50(4):613-620. doi: 10.1038/s41588-018-0091-2. Epub 2018 Apr 2.

6.

Salvage tigecycline in high risk febrile neutropenic patients with hematological malignancies: a prospective multicenter study.

Zhou XP, Ye XJ, Shen JP, Lan JP, Jiang HF, Zhang J, Zhang XJ, Li L, Qian SX, Tong HY.

Leuk Lymphoma. 2018 Nov;59(11):2679-2685. doi: 10.1080/10428194.2018.1436173. Epub 2018 Feb 16.

PMID:
29448851
7.

Correcting CRISPR for copy number.

Shen JP, Ideker T.

Nat Genet. 2017 Nov 29;49(12):1674-1675. doi: 10.1038/ng.3994.

PMID:
29186130
8.
9.

Impacts of Projected Climate Warming and Wetting on Soil Microbial Communities in Alpine Grassland Ecosystems of the Tibetan Plateau.

Zeng J, Shen JP, Wang JT, Hu HW, Zhang CJ, Bai R, Zhang LM, He JZ.

Microb Ecol. 2018 May;75(4):1009-1023. doi: 10.1007/s00248-017-1098-4. Epub 2017 Nov 9.

PMID:
29124311
10.

Genetic interaction mapping in mammalian cells using CRISPR interference.

Du D, Roguev A, Gordon DE, Chen M, Chen SH, Shales M, Shen JP, Ideker T, Mali P, Qi LS, Krogan NJ.

Nat Methods. 2017 Jun;14(6):577-580. doi: 10.1038/nmeth.4286. Epub 2017 May 8.

11.

Interactive effects of multiple climate change factors on ammonia oxidizers and denitrifiers in a temperate steppe.

Zhang CJ, Shen JP, Sun YF, Wang JT, Zhang LM, Yang ZL, Han HY, Wan SQ, He JZ.

FEMS Microbiol Ecol. 2017 Apr 1;93(4). doi: 10.1093/femsec/fix037.

PMID:
28334274
12.

Genetic and functional diversity of ubiquitous DNA viruses in selected Chinese agricultural soils.

Han LL, Yu DT, Zhang LM, Shen JP, He JZ.

Sci Rep. 2017 Mar 22;7:45142. doi: 10.1038/srep45142.

13.

Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions.

Shen JP, Zhao D, Sasik R, Luebeck J, Birmingham A, Bojorquez-Gomez A, Licon K, Klepper K, Pekin D, Beckett AN, Sanchez KS, Thomas A, Kuo CC, Du D, Roguev A, Lewis NE, Chang AN, Kreisberg JF, Krogan N, Qi L, Ideker T, Mali P.

Nat Methods. 2017 Jun;14(6):573-576. doi: 10.1038/nmeth.4225. Epub 2017 Mar 20.

14.

Effect of Chinese medicine treatment based on pattern identification on cellular immunophenotype of myelodysplastic syndrome.

Zhang Y, Qian LL, Shen JP, Chen JF, Gao YT, Xiang JJ, Ye BD, Zhou YH.

Chin J Integr Med. 2017 Jun;23(6):469-473. doi: 10.1007/s11655-016-2276-9. Epub 2016 Dec 9.

PMID:
27933512
15.

Primary Succession of Nitrogen Cycling Microbial Communities Along the Deglaciated Forelands of Tianshan Mountain, China.

Zeng J, Lou K, Zhang CJ, Wang JT, Hu HW, Shen JP, Zhang LM, Han LL, Zhang T, Lin Q, Chalk PM, He JZ.

Front Microbiol. 2016 Aug 30;7:1353. doi: 10.3389/fmicb.2016.01353. eCollection 2016.

16.

Effects of dicyandiamide and acetylene on N2O emissions and ammonia oxidizers in a fluvo-aquic soil applied with urea.

Wang Q, Zhang LM, Shen JP, Du S, Han LL, He JZ.

Environ Sci Pollut Res Int. 2016 Nov;23(22):23023-23033. Epub 2016 Aug 31.

PMID:
27581050
17.

A Network of Conserved Synthetic Lethal Interactions for Exploration of Precision Cancer Therapy.

Srivas R, Shen JP, Yang CC, Sun SM, Li J, Gross AM, Jensen J, Licon K, Bojorquez-Gomez A, Klepper K, Huang J, Pekin D, Xu JL, Yeerna H, Sivaganesh V, Kollenstart L, van Attikum H, Aza-Blanc P, Sobol RW, Ideker T.

Mol Cell. 2016 Aug 4;63(3):514-25. doi: 10.1016/j.molcel.2016.06.022. Epub 2016 Jul 21.

18.

Morphological plasticity of bacteria-Open questions.

Shen JP, Chou CF.

Biomicrofluidics. 2016 Jun 10;10(3):031501. doi: 10.1063/1.4953660. eCollection 2016 May. Review.

19.

[Global change field manipulative experiments and their applications in soil microbial ecology.]

Zhang CJ, He JZ, Shen JP.

Ying Yong Sheng Tai Xue Bao. 2016 May;27(5):1663-1673. doi: 10.13287/j.1001-9332.201605.010. Review. Chinese.

PMID:
29732830
20.

Synthesis of Eupalinilide E, a Promoter of Human Hematopoietic Stem and Progenitor Cell Expansion.

Johnson TC, Chin MR, Han T, Shen JP, Rana T, Siegel D.

J Am Chem Soc. 2016 May 11;138(18):6068-73. doi: 10.1021/jacs.6b03055. Epub 2016 May 2.

PMID:
27096704

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