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Items: 1 to 20 of 92

1.

Molecular adaptations of bacterial mercuric reductase to the hypersaline Kebrit Deep in the Red Sea.

Ramadan E, Maged M, El Hosseiny A, Chambergo FS, Setubal JC, El Dorry H.

Appl Environ Microbiol. 2018 Nov 30. pii: AEM.01431-18. doi: 10.1128/AEM.01431-18. [Epub ahead of print]

PMID:
30504211
2.

Inhibition of histone methyltransferase EZH2 in Schistosoma mansoni in vitro by GSK343 reduces egg laying and decreases the expression of genes implicated in DNA replication and noncoding RNA metabolism.

Pereira ASA, Amaral MS, Vasconcelos EJR, Pires DS, Asif H, daSilva LF, Morales-Vicente DA, Carneiro VC, Angeli CB, Palmisano G, Fantappie MR, Pierce RJ, Setubal JC, Verjovski-Almeida S.

PLoS Negl Trop Dis. 2018 Oct 26;12(10):e0006873. doi: 10.1371/journal.pntd.0006873. eCollection 2018 Oct.

3.

Machine learning meets genome assembly.

Padovani de Souza K, Setubal JC, Ponce de Leon F de Carvalho AC, Oliveira G, Chateau A, Alves R.

Brief Bioinform. 2018 Aug 17. doi: 10.1093/bib/bby072. [Epub ahead of print]

PMID:
30137230
4.

MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins.

Amgarten D, Braga LPP, da Silva AM, Setubal JC.

Front Genet. 2018 Aug 7;9:304. doi: 10.3389/fgene.2018.00304. eCollection 2018.

5.

A Tropical Composting Operation Unit at São Paulo Zoo as a Source of Bacterial Proteolytic Enzymes.

Ramos PL, Kondo MY, Santos SMB, de Vasconcellos SP, Rocha RCS, da Cruz JB, Eugenio PFM, Cabral H, Juliano MA, Juliano L, Setubal JC, da Silva AM, Cappelini LTD.

Appl Biochem Biotechnol. 2018 Jun 23. doi: 10.1007/s12010-018-2810-7. [Epub ahead of print]

PMID:
29936594
6.

Chromatin Landscape Distinguishes the Genomic Loci of Hundreds of Androgen-Receptor-Associated LincRNAs From the Loci of Non-associated LincRNAs.

daSilva LF, Beckedorff FC, Ayupe AC, Amaral MS, Mesel V, Videira A, Reis EM, Setubal JC, Verjovski-Almeida S.

Front Genet. 2018 Apr 25;9:132. doi: 10.3389/fgene.2018.00132. eCollection 2018.

7.

Comparative Metagenomics.

Maltez Thomas A, Prata Lima F, Maria Silva Moura L, Maria da Silva A, Dias-Neto E, Setubal JC.

Methods Mol Biol. 2018;1704:243-260. doi: 10.1007/978-1-4939-7463-4_8.

PMID:
29277868
8.

Phylogenomics.

Patané JSL, Martins J Jr, Setubal JC.

Methods Mol Biol. 2018;1704:103-187. doi: 10.1007/978-1-4939-7463-4_5. Review.

PMID:
29277865
9.

Comparative Genomics for Prokaryotes.

Setubal JC, Almeida NF, Wattam AR.

Methods Mol Biol. 2018;1704:55-78. doi: 10.1007/978-1-4939-7463-4_3. Review.

PMID:
29277863
10.

Gene Phylogenies and Orthologous Groups.

Setubal JC, Stadler PF.

Methods Mol Biol. 2018;1704:1-28. doi: 10.1007/978-1-4939-7463-4_1.

PMID:
29277861
11.

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae.

Assis RAB, Polloni LC, Patané JSL, Thakur S, Felestrino ÉB, Diaz-Caballero J, Digiampietri LA, Goulart LR, Almeida NF, Nascimento R, Dandekar AM, Zaini PA, Setubal JC, Guttman DS, Moreira LM.

Sci Rep. 2017 Nov 23;7(1):16133. doi: 10.1038/s41598-017-16325-1.

12.

Plasmid-mediated mcr-1 in carbapenem-susceptible Escherichia coli ST156 causing a blood infection: an unnoticeable spread of colistin resistance in Brazil?

Rossi F, Girardello R, Morais C, Cury AP, Martins LF, da Silva AM, Abdala E, Setubal JC, da Silva Duarte AJ.

Clinics (Sao Paulo). 2017 Oct;72(10):642-644. doi: 10.6061/clinics/2017(10)09.

13.

TabPath: interactive tables for metabolic pathway analysis.

Moraes LÂG, Felestrino ÉB, Assis RAB, Matos D, Lima JC, Lima LA, Almeida NF, Setubal JC, Garcia CCM, Moreira LM.

Bioinformatics. 2018 Mar 15;34(6):1040-1042. doi: 10.1093/bioinformatics/btx714.

PMID:
29112698
14.

Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness.

Mendes E, Acetturi BG, Thomas AM, Martins FDS, Crisma AR, Murata G, Braga TT, Camâra NOS, Franco ALDS, Setubal JC, Ribeiro WR, Valduga CJ, Curi R, Dias-Neto E, Tavares-de-Lima W, Ferreira CM.

Front Microbiol. 2017 Sep 11;8:1732. doi: 10.3389/fmicb.2017.01732. eCollection 2017.

15.

Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection.

Moreira LM, Soares MR, Facincani AP, Ferreira CB, Ferreira RM, Ferro MIT, Gozzo FC, Felestrino ÉB, Assis RAB, Garcia CCM, Setubal JC, Ferro JA, de Oliveira JCF.

BMC Microbiol. 2017 Jul 11;17(1):155. doi: 10.1186/s12866-017-1063-x.

16.

The Candidatus Liberibacter-Host Interface: Insights into Pathogenesis Mechanisms and Disease Control.

Wang N, Pierson EA, Setubal JC, Xu J, Levy JG, Zhang Y, Li J, Rangel LT, Martins J Jr.

Annu Rev Phytopathol. 2017 Aug 4;55:451-482. doi: 10.1146/annurev-phyto-080516-035513. Epub 2017 Jun 21. Review.

PMID:
28637377
17.

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Amgarten D, Martins LF, Lombardi KC, Antunes LP, de Souza APS, Nicastro GG, Kitajima EW, Quaggio RB, Upton C, Setubal JC, da Silva AM.

BMC Genomics. 2017 May 4;18(1):346. doi: 10.1186/s12864-017-3729-z.

18.

Genome-Centric Analysis of a Thermophilic and Cellulolytic Bacterial Consortium Derived from Composting.

Lemos LN, Pereira RV, Quaggio RB, Martins LF, Moura LMS, da Silva AR, Antunes LP, da Silva AM, Setubal JC.

Front Microbiol. 2017 Apr 19;8:644. doi: 10.3389/fmicb.2017.00644. eCollection 2017.

19.

Comparative Analysis of Ralstonia solanacearum Methylomes.

Erill I, Puigvert M, Legrand L, Guarischi-Sousa R, Vandecasteele C, Setubal JC, Genin S, Guidot A, Valls M.

Front Plant Sci. 2017 Apr 13;8:504. doi: 10.3389/fpls.2017.00504. eCollection 2017.

20.

Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii.

Puigvert M, Guarischi-Sousa R, Zuluaga P, Coll NS, Macho AP, Setubal JC, Valls M.

Front Plant Sci. 2017 Mar 20;8:370. doi: 10.3389/fpls.2017.00370. eCollection 2017.

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