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Items: 1 to 20 of 89

1.

Involvement of CesA4, CesA7-A/B and CesA8-A/B in secondary wall formation in Populus trichocarpa wood.

Abbas M, Peszlen I, Shi R, Kim H, Katahira R, Kafle K, Xiang Z, Huang X, Min D, Mohamadamin M, Yang C, Dai X, Yan X, Park S, Li Y, Kim SH, Davis M, Ralph J, Sederoff RR, Chiang VL, Li Q.

Tree Physiol. 2020 Jan 1;40(1):73-89. doi: 10.1093/treephys/tpz020.

PMID:
31211386
2.

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).

Chen H, Wang JP, Liu H, Li H, Lin YJ, Shi R, Yang C, Gao J, Zhou C, Li Q, Sederoff RR, Li W, Chiang VL.

Plant Cell. 2019 Mar;31(3):602-626. doi: 10.1105/tpc.18.00620. Epub 2019 Feb 12.

3.

Enzyme-Enzyme Interactions in Monolignol Biosynthesis.

Wang JP, Liu B, Sun Y, Chiang VL, Sederoff RR.

Front Plant Sci. 2019 Jan 11;9:1942. doi: 10.3389/fpls.2018.01942. eCollection 2018. Review.

4.

Flux modeling for monolignol biosynthesis.

Wang JP, Matthews ML, Naik PP, Williams CM, Ducoste JJ, Sederoff RR, Chiang VL.

Curr Opin Biotechnol. 2019 Apr;56:187-192. doi: 10.1016/j.copbio.2018.12.003. Epub 2018 Dec 18. Review.

PMID:
30557780
5.

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa.

Yan X, Liu J, Kim H, Liu B, Huang X, Yang Z, Lin YJ, Chen H, Yang C, Wang JP, Muddiman DC, Ralph J, Sederoff RR, Li Q, Chiang VL.

New Phytol. 2019 Apr;222(1):244-260. doi: 10.1111/nph.15505. Epub 2018 Oct 27.

6.

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa.

Lin YJ, Chen H, Li Q, Li W, Wang JP, Shi R, Tunlaya-Anukit S, Shuai P, Wang Z, Ma H, Li H, Sun YH, Sederoff RR, Chiang VL.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9722-E9729. doi: 10.1073/pnas.1714422114. Epub 2017 Oct 23.

7.

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa.

Shi R, Wang JP, Lin YC, Li Q, Sun YH, Chen H, Sederoff RR, Chiang VL.

Planta. 2017 May;245(5):927-938. doi: 10.1007/s00425-016-2640-1. Epub 2017 Jan 12.

PMID:
28083709
8.

Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa.

Loziuk PL, Parker J, Li W, Lin CY, Wang JP, Li Q, Sederoff RR, Chiang VL, Muddiman DC.

J Proteome Res. 2015 Oct 2;14(10):4158-68. doi: 10.1021/acs.jproteome.5b00233. Epub 2015 Sep 1.

PMID:
26325666
9.

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis.

Wang JP, Chuang L, Loziuk PL, Chen H, Lin YC, Shi R, Qu GZ, Muddiman DC, Sederoff RR, Chiang VL.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8481-6. doi: 10.1073/pnas.1510473112. Epub 2015 Jun 24.

10.

4-Coumaroyl and caffeoyl shikimic acids inhibit 4-coumaric acid:coenzyme A ligases and modulate metabolic flux for 3-hydroxylation in monolignol biosynthesis of Populus trichocarpa.

Lin CY, Wang JP, Li Q, Chen HC, Liu J, Loziuk P, Song J, Williams C, Muddiman DC, Sederoff RR, Chiang VL.

Mol Plant. 2015 Jan;8(1):176-87. doi: 10.1016/j.molp.2014.12.003. Epub 2014 Dec 11.

11.

Populus trichocarpa.

Li Q, Yeh TF, Yang C, Song J, Chen ZZ, Sederoff RR, Chiang VL.

Methods Mol Biol. 2015;1224:357-63. doi: 10.1007/978-1-4939-1658-0_28.

PMID:
25416271
12.

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa.

Lin CY, Wang JP, Li Q, Chen HC, Liu J, Loziuk P, Song J, Williams C, Muddiman DC, Sederoff RR, Chiang VL.

Mol Plant. 2014 Oct 20. pii: ssu117. [Epub ahead of print]

PMID:
25336570
13.

Plant biotechnology for lignocellulosic biofuel production.

Li Q, Song J, Peng S, Wang JP, Qu GZ, Sederoff RR, Chiang VL.

Plant Biotechnol J. 2014 Dec;12(9):1174-92. doi: 10.1111/pbi.12273. Epub 2014 Oct 20. Review.

14.
15.

A simple improved-throughput xylem protoplast system for studying wood formation.

Lin YC, Li W, Chen H, Li Q, Sun YH, Shi R, Lin CY, Wang JP, Chen HC, Chuang L, Qu GZ, Sederoff RR, Chiang VL.

Nat Protoc. 2014 Sep;9(9):2194-205. doi: 10.1038/nprot.2014.147. Epub 2014 Aug 21.

PMID:
25144270
16.

A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue.

Li W, Lin YC, Li Q, Shi R, Lin CY, Chen H, Chuang L, Qu GZ, Sederoff RR, Chiang VL.

Nat Protoc. 2014 Sep;9(9):2180-93. doi: 10.1038/nprot.2014.146. Epub 2014 Aug 21.

PMID:
25144269
17.

Systems biology of lignin biosynthesis in Populus trichocarpa: heteromeric 4-coumaric acid:coenzyme A ligase protein complex formation, regulation, and numerical modeling.

Chen HC, Song J, Wang JP, Lin YC, Ducoste J, Shuford CM, Liu J, Li Q, Shi R, Nepomuceno A, Isik F, Muddiman DC, Williams C, Sederoff RR, Chiang VL.

Plant Cell. 2014 Mar;26(3):876-93. doi: 10.1105/tpc.113.119685. Epub 2014 Mar 11.

18.

Complete proteomic-based enzyme reaction and inhibition kinetics reveal how monolignol biosynthetic enzyme families affect metabolic flux and lignin in Populus trichocarpa.

Wang JP, Naik PP, Chen HC, Shi R, Lin CY, Liu J, Shuford CM, Li Q, Sun YH, Tunlaya-Anukit S, Williams CM, Muddiman DC, Ducoste JJ, Sederoff RR, Chiang VL.

Plant Cell. 2014 Mar;26(3):894-914. doi: 10.1105/tpc.113.120881. Epub 2014 Mar 11.

19.

SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa.

Lin YC, Li W, Sun YH, Kumari S, Wei H, Li Q, Tunlaya-Anukit S, Sederoff RR, Chiang VL.

Plant Cell. 2013 Nov;25(11):4324-41. doi: 10.1105/tpc.113.117697. Epub 2013 Nov 26.

20.

Understanding the role of proteolytic digestion on discovery and targeted proteomic measurements using liquid chromatography tandem mass spectrometry and design of experiments.

Loziuk PL, Wang J, Li Q, Sederoff RR, Chiang VL, Muddiman DC.

J Proteome Res. 2013 Dec 6;12(12):5820-9. doi: 10.1021/pr4008442. Epub 2013 Nov 1.

PMID:
24144163

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