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Items: 1 to 20 of 42

1.

Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry.

Monroe EB, Annangudi SP, Wadhams AA, Richmond TA, Yang N, Southey BR, Romanova EV, Schoofs L, Baggerman G, Sweedler JV.

J Am Soc Mass Spectrom. 2018 May;29(5):923-934. doi: 10.1007/s13361-018-1898-x. Epub 2018 Apr 17.

PMID:
29667164
2.

Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal.

Turajlic S, Xu H, Litchfield K, Rowan A, Chambers T, Lopez JI, Nicol D, O'Brien T, Larkin J, Horswell S, Stares M, Au L, Jamal-Hanjani M, Challacombe B, Chandra A, Hazell S, Eichler-Jonsson C, Soultati A, Chowdhury S, Rudman S, Lynch J, Fernando A, Stamp G, Nye E, Jabbar F, Spain L, Lall S, Guarch R, Falzon M, Proctor I, Pickering L, Gore M, Watkins TBK, Ward S, Stewart A, DiNatale R, Becerra MF, Reznik E, Hsieh JJ, Richmond TA, Mayhew GF, Hill SM, McNally CD, Jones C, Rosenbaum H, Stanislaw S, Burgess DL, Alexander NR, Swanton C; PEACE; TRACERx Renal Consortium.

Cell. 2018 Apr 19;173(3):581-594.e12. doi: 10.1016/j.cell.2018.03.057. Epub 2018 Apr 12.

3.

Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System.

Wendt J, Rosenbaum H, Richmond TA, Jeddeloh JA, Burgess DL.

Methods Mol Biol. 2018;1708:383-405. doi: 10.1007/978-1-4939-7481-8_20.

PMID:
29224155
4.

Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System.

Tan JC, Bouriakov VD, Feng L, Richmond TA, Burgess D.

Methods Mol Biol. 2016;1402:73-100. doi: 10.1007/978-1-4939-3378-5_8.

PMID:
26721485
5.

Genetic perturbation of the maize methylome.

Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, Vaughn MW, Kaeppler SM, Jeddeloh JA, Springer NM.

Plant Cell. 2014 Dec;26(12):4602-16. doi: 10.1105/tpc.114.133140. Epub 2014 Dec 19.

6.

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2014 Sep;79(6):993-1008. doi: 10.1111/tpj.12601. Epub 2014 Aug 11.

7.

Proteome-wide epitope mapping of antibodies using ultra-dense peptide arrays.

Forsström B, Axnäs BB, Stengele KP, Bühler J, Albert TJ, Richmond TA, Hu FJ, Nilsson P, Hudson EP, Rockberg J, Uhlen M.

Mol Cell Proteomics. 2014 Jun;13(6):1585-97. doi: 10.1074/mcp.M113.033308. Epub 2014 Apr 4.

8.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

9.

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, Muehlbauer GJ, Stein N.

Genome Biol. 2013 Jun 12;14(6):R58. doi: 10.1186/gb-2013-14-6-r58.

10.

Urotensin II in invertebrates: from structure to function in Aplysia californica.

Romanova EV, Sasaki K, Alexeeva V, Vilim FS, Jing J, Richmond TA, Weiss KR, Sweedler JV.

PLoS One. 2012;7(11):e48764. doi: 10.1371/journal.pone.0048764. Epub 2012 Nov 8.

11.

Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster.

Hong X, Doddapaneni H, Comeron JM, Rodesch MJ, Halvensleben HA, Nien CY, Bolei F, Metpally R, Richmond TA, Albert TJ, Manak JR.

G3 (Bethesda). 2012 Aug;2(8):873-82. doi: 10.1534/g3.112.003194. Epub 2012 Aug 1.

12.

Somatic retrotransposition alters the genetic landscape of the human brain.

Baillie JK, Barnett MW, Upton KR, Gerhardt DJ, Richmond TA, De Sapio F, Brennan PM, Rizzu P, Smith S, Fell M, Talbot RT, Gustincich S, Freeman TC, Mattick JS, Hume DA, Heutink P, Carninci P, Jeddeloh JA, Faulkner GJ.

Nature. 2011 Oct 30;479(7374):534-7. doi: 10.1038/nature10531.

13.

Diversity of conotoxin types from Conus californicus reflects a diversity of prey types and a novel evolutionary history.

Elliger CA, Richmond TA, Lebaric ZN, Pierce NT, Sweedler JV, Gilly WF.

Toxicon. 2011 Feb;57(2):311-22. doi: 10.1016/j.toxicon.2010.12.008. Epub 2010 Dec 21.

14.

A diverse family of novel peptide toxins from an unusual cone snail, Conus californicus.

Gilly WF, Richmond TA, Duda TF Jr, Elliger C, Lebaric Z, Schulz J, Bingham JP, Sweedler JV.

J Exp Biol. 2011 Jan 1;214(Pt 1):147-61. doi: 10.1242/jeb.046086.

15.

Whole exome capture in solution with 3 Gbp of data.

Bainbridge MN, Wang M, Burgess DL, Kovar C, Rodesch MJ, D'Ascenzo M, Kitzman J, Wu YQ, Newsham I, Richmond TA, Jeddeloh JA, Muzny D, Albert TJ, Gibbs RA.

Genome Biol. 2010;11(6):R62. doi: 10.1186/gb-2010-11-6-r62. Epub 2010 Jun 17.

16.

Acquired copy number alterations in adult acute myeloid leukemia genomes.

Walter MJ, Payton JE, Ries RE, Shannon WD, Deshmukh H, Zhao Y, Baty J, Heath S, Westervelt P, Watson MA, Tomasson MH, Nagarajan R, O'Gara BP, Bloomfield CD, Mrózek K, Selzer RR, Richmond TA, Kitzman J, Geoghegan J, Eis PS, Maupin R, Fulton RS, McLellan M, Wilson RK, Mardis ER, Link DC, Graubert TA, DiPersio JF, Ley TJ.

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12950-5. doi: 10.1073/pnas.0903091106. Epub 2009 Jul 27.

17.

High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.

Oda M, Glass JL, Thompson RF, Mo Y, Olivier EN, Figueroa ME, Selzer RR, Richmond TA, Zhang X, Dannenberg L, Green RD, Melnick A, Hatchwell E, Bouhassira EE, Verma A, Suzuki M, Greally JM.

Nucleic Acids Res. 2009 Jul;37(12):3829-39. doi: 10.1093/nar/gkp260. Epub 2009 Apr 22.

18.

Quantitative peptidomics reveal brain peptide signatures of behavior.

Brockmann A, Annangudi SP, Richmond TA, Ament SA, Xie F, Southey BR, Rodriguez-Zas SR, Robinson GE, Sweedler JV.

Proc Natl Acad Sci U S A. 2009 Feb 17;106(7):2383-8. doi: 10.1073/pnas.0813021106. Epub 2009 Jan 28.

19.

Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays.

Matejková P, Strouhal M, Smajs D, Norris SJ, Palzkill T, Petrosino JF, Sodergren E, Norton JE, Singh J, Richmond TA, Molla MN, Albert TJ, Weinstock GM.

BMC Microbiol. 2008 May 15;8:76. doi: 10.1186/1471-2180-8-76.

20.

An analytical pipeline for genomic representations used for cytosine methylation studies.

Thompson RF, Reimers M, Khulan B, Gissot M, Richmond TA, Chen Q, Zheng X, Kim K, Greally JM.

Bioinformatics. 2008 May 1;24(9):1161-7. doi: 10.1093/bioinformatics/btn096. Epub 2008 Mar 18.

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