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Items: 1 to 20 of 99

1.

Mammalian transposable elements and their impacts on genome evolution.

Platt RN 2nd, Vandewege MW, Ray DA.

Chromosome Res. 2018 Mar;26(1-2):25-43. doi: 10.1007/s10577-017-9570-z. Epub 2018 Feb 1. Review.

2.

Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species.

Teeling EC, Vernes SC, Dávalos LM, Ray DA, Gilbert MTP, Myers E; Bat1K Consortium.

Annu Rev Anim Biosci. 2018 Feb 15;6:23-46. doi: 10.1146/annurev-animal-022516-022811. Epub 2017 Nov 20.

PMID:
29166127
3.

Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats.

Platt RN 2nd, Faircloth BC, Sullivan KAM, Kieran TJ, Glenn TC, Vandewege MW, Lee TE Jr, Baker RJ, Stevens RD, Ray DA.

Syst Biol. 2018 Mar 1;67(2):236-249. doi: 10.1093/sysbio/syx070.

4.

Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

Sotero-Caio CG, Platt RN 2nd, Suh A, Ray DA.

Genome Biol Evol. 2017 Jan 1;9(1):161-177. doi: 10.1093/gbe/evw264. Review.

5.

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling.

Rice ES, Kohno S, John JS, Pham S, Howard J, Lareau LF, O'Connell BL, Hickey G, Armstrong J, Deran A, Fiddes I, Platt RN 2nd, Gresham C, McCarthy F, Kern C, Haan D, Phan T, Schmidt C, Sanford JR, Ray DA, Paten B, Guillette LJ Jr, Green RE.

Genome Res. 2017 May;27(5):686-696. doi: 10.1101/gr.213595.116. Epub 2017 Jan 30.

6.

Bacteriostatic behavior of surface modulated silicon nitride in comparison to polyetheretherketone and titanium.

Bock RM, Jones EN, Ray DA, Sonny Bal B, Pezzotti G, McEntire BJ.

J Biomed Mater Res A. 2017 May;105(5):1521-1534. doi: 10.1002/jbm.a.35987. Epub 2017 Mar 20.

PMID:
28000413
7.
8.

Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome.

Platt RN 2nd, Mangum SF, Ray DA.

Mob DNA. 2016 Jul 22;7:12. doi: 10.1186/s13100-016-0071-y. eCollection 2016.

9.

Transposable Element Targeting by piRNAs in Laurasiatherians with Distinct Transposable Element Histories.

Vandewege MW, Platt RN 2nd, Ray DA, Hoffmann FG.

Genome Biol Evol. 2016 May 9;8(5):1327-37. doi: 10.1093/gbe/evw078.

10.

Transposable elements and small RNAs: Genomic fuel for species diversity.

Hoffmann FG, McGuire LP, Counterman BA, Ray DA.

Mob Genet Elements. 2015 Jul 24;5(5):63-66. eCollection 2015 Sep-Oct.

11.

Contrasting Patterns of Evolutionary Diversification in the Olfactory Repertoires of Reptile and Bird Genomes.

Vandewege MW, Mangum SF, Gabaldón T, Castoe TA, Ray DA, Hoffmann FG.

Genome Biol Evol. 2016 Feb 9;8(3):470-80. doi: 10.1093/gbe/evw013.

12.

Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies.

Platt RN 2nd, Blanco-Berdugo L, Ray DA.

Genome Biol Evol. 2016 Jan 21;8(2):403-10. doi: 10.1093/gbe/evw009.

13.

Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.

Platt RN 2nd, Zhang Y, Witherspoon DJ, Xing J, Suh A, Keith MS, Jorde LB, Stevens RD, Ray DA.

Genome Biol Evol. 2015 May 25;7(6):1664-75. doi: 10.1093/gbe/evv099.

14.

Differential SINE evolution in vesper and non-vesper bats.

Ray DA, Pagan HJ, Platt RN 2nd, Kroll AR, Schaack S, Stevens RD.

Mob DNA. 2015 May 15;6:10. doi: 10.1186/s13100-015-0038-4. eCollection 2015.

15.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.

16.

Comparative genomics reveals insights into avian genome evolution and adaptation.

Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J; Avian Genome Consortium, Jarvis ED, Gilbert MT, Wang J.

Science. 2014 Dec 12;346(6215):1311-20. doi: 10.1126/science.1251385. Epub 2014 Dec 11.

17.

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.

Jaratlerdsiri W, Deakin J, Godinez RM, Shan X, Peterson DG, Marthey S, Lyons E, McCarthy FM, Isberg SR, Higgins DP, Chong AY, John JS, Glenn TC, Ray DA, Gongora J.

PLoS One. 2014 Dec 11;9(12):e114631. doi: 10.1371/journal.pone.0114631. eCollection 2014.

18.

Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes.

Suh A, Churakov G, Ramakodi MP, Platt RN 2nd, Jurka J, Kojima KK, Caballero J, Smit AF, Vliet KA, Hoffmann FG, Brosius J, Green RE, Braun EL, Ray DA, Schmitz J.

Genome Biol Evol. 2014 Dec 11;7(1):205-17. doi: 10.1093/gbe/evu256.

19.

Early mesozoic coexistence of amniotes and hepadnaviridae.

Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H.

PLoS Genet. 2014 Dec 11;10(12):e1004559. doi: 10.1371/journal.pgen.1004559. eCollection 2014 Dec.

20.

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes.

Chong AY, Kojima KK, Jurka J, Ray DA, Smit AF, Isberg SR, Gongora J.

Retrovirology. 2014 Dec 12;11:71. doi: 10.1186/s12977-014-0071-2.

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