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Items: 1 to 20 of 53

1.

Estimating teat canal cross-sectional area to determine the effects of teat-end and mouthpiece chamber vacuum on teat congestion.

Penry JF, Upton J, Mein GA, Rasmussen MD, Ohnstad I, Thompson PD, Reinemann DJ.

J Dairy Sci. 2017 Jan;100(1):821-827. doi: 10.3168/jds.2016-11533. Epub 2016 Nov 9.

PMID:
27837986
2.

Effect of pulsation rest phase duration on teat end congestion.

Upton J, Penry JF, Rasmussen MD, Thompson PD, Reinemann DJ.

J Dairy Sci. 2016 May;99(5):3958-3965. doi: 10.3168/jds.2015-10466.

PMID:
26947293
3.

A comparative encyclopedia of DNA elements in the mouse genome.

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.

Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.

4.

Short communication: Changes in gait symmetry in healthy and lame dairy cows based on 3-dimensional ground reaction force curves following claw trimming.

Thorup VM, do Nascimento OF, Skjøth F, Voigt M, Rasmussen MD, Bennedsgaard TW, Ingvartsen KL.

J Dairy Sci. 2014 Dec;97(12):7679-84. doi: 10.3168/jds.2014-8410. Epub 2014 Oct 11.

PMID:
25306278
5.

Genome-wide inference of ancestral recombination graphs.

Rasmussen MD, Hubisz MJ, Gronau I, Siepel A.

PLoS Genet. 2014 May 15;10(5):e1004342. doi: 10.1371/journal.pgen.1004342. eCollection 2014.

6.

Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees.

Wu YC, Rasmussen MD, Bansal MS, Kellis M.

Genome Res. 2014 Mar;24(3):475-86. doi: 10.1101/gr.161968.113. Epub 2013 Dec 5.

7.

TreeFix: statistically informed gene tree error correction using species trees.

Wu YC, Rasmussen MD, Bansal MS, Kellis M.

Syst Biol. 2013 Jan 1;62(1):110-20. doi: 10.1093/sysbio/sys076. Epub 2012 Sep 4.

8.

Replacing and additive horizontal gene transfer in Streptococcus.

Choi SC, Rasmussen MD, Hubisz MJ, Gronau I, Stanhope MJ, Siepel A.

Mol Biol Evol. 2012 Nov;29(11):3309-20. doi: 10.1093/molbev/mss138. Epub 2012 May 21.

9.

Roles of major facilitator superfamily transporters in phosphate response in Drosophila.

Bergwitz C, Rasmussen MD, DeRobertis C, Wee MJ, Sinha S, Chen HH, Huang J, Perrimon N.

PLoS One. 2012;7(2):e31730. doi: 10.1371/journal.pone.0031730. Epub 2012 Feb 16.

10.

Unified modeling of gene duplication, loss, and coalescence using a locus tree.

Rasmussen MD, Kellis M.

Genome Res. 2012 Apr;22(4):755-65. doi: 10.1101/gr.123901.111. Epub 2012 Jan 23.

11.

A high-resolution map of human evolutionary constraint using 29 mammals.

Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst J, Jordan G, Mauceli E, Ward LD, Lowe CB, Holloway AK, Clamp M, Gnerre S, Alföldi J, Beal K, Chang J, Clawson H, Cuff J, Di Palma F, Fitzgerald S, Flicek P, Guttman M, Hubisz MJ, Jaffe DB, Jungreis I, Kent WJ, Kostka D, Lara M, Martins AL, Massingham T, Moltke I, Raney BJ, Rasmussen MD, Robinson J, Stark A, Vilella AJ, Wen J, Xie X, Zody MC; Broad Institute Sequencing Platform and Whole Genome Assembly Team, Baldwin J, Bloom T, Chin CW, Heiman D, Nicol R, Nusbaum C, Young S, Wilkinson J, Worley KC, Kovar CL, Muzny DM, Gibbs RA; Baylor College of Medicine Human Genome Sequencing Center Sequencing Team, Cree A, Dihn HH, Fowler G, Jhangiani S, Joshi V, Lee S, Lewis LR, Nazareth LV, Okwuonu G, Santibanez J, Warren WC, Mardis ER, Weinstock GM, Wilson RK; Genome Institute at Washington University, Delehaunty K, Dooling D, Fronik C, Fulton L, Fulton B, Graves T, Minx P, Sodergren E, Birney E, Margulies EH, Herrero J, Green ED, Haussler D, Siepel A, Goldman N, Pollard KS, Pedersen JS, Lander ES, Kellis M.

Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530.

12.

Evolution at the subgene level: domain rearrangements in the Drosophila phylogeny.

Wu YC, Rasmussen MD, Kellis M.

Mol Biol Evol. 2012 Feb;29(2):689-705. doi: 10.1093/molbev/msr222. Epub 2011 Sep 7.

13.

A Bayesian approach for fast and accurate gene tree reconstruction.

Rasmussen MD, Kellis M.

Mol Biol Evol. 2011 Jan;28(1):273-90. doi: 10.1093/molbev/msq189. Epub 2010 Jul 25.

14.

Global transcriptional analysis of Bacillus licheniformis reveals an overlap between heat shock and iron limitation stimulon.

Nielsen AK, Breüner A, Krzystanek M, Andersen JT, Poulsen TA, Olsen PB, Mijakovic I, Rasmussen MD.

J Mol Microbiol Biotechnol. 2010;18(3):162-73. doi: 10.1159/000315457. Epub 2010 Jun 8.

15.

Contributions of the pre- and pro-regions of a Staphylococcus hyicus lipase to secretion of a heterologous protein by Bacillus subtilis.

Kouwen TR, Nielsen AK, Denham EL, Dubois JY, Dorenbos R, Rasmussen MD, Quax WJ, Freudl R, van Dijl JM.

Appl Environ Microbiol. 2010 Feb;76(3):659-69. doi: 10.1128/AEM.01671-09. Epub 2009 Nov 30.

16.

Udder health of cows changing from tie stalls or free stalls with conventional milking to free stalls with either conventional or automatic milking.

Hovinen M, Rasmussen MD, Pyörälä S.

J Dairy Sci. 2009 Aug;92(8):3696-703. doi: 10.3168/jds.2008-1962.

PMID:
19620651
17.

Evolution of pathogenicity and sexual reproduction in eight Candida genomes.

Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA.

Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064.

18.

Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes.

Lin MF, Deoras AN, Rasmussen MD, Kellis M.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000067. doi: 10.1371/journal.pcbi.1000067.

19.

Identification of peptides in milk as a result of proteolysis at different levels of somatic cell counts using LC MALDI MS/MS detection.

Wedholm A, Møller HS, Lindmark-Månsson H, Rasmussen MD, Andrén A, Larsen LB.

J Dairy Res. 2008 Feb;75(1):76-83. doi: 10.1017/S0022029907002968. Epub 2008 Jan 29.

PMID:
18226301
20.

A facilitated survey instrument captures significantly more anesthesia events than does traditional voluntary event reporting.

Oken A, Rasmussen MD, Slagle JM, Jain S, Kuykendall T, Ordonez N, Weinger MB.

Anesthesiology. 2007 Dec;107(6):909-22.

PMID:
18043059

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