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Items: 1 to 20 of 232

1.

Reconstruction and prediction of viral disease epidemics.

Kraemer MUG, Cummings DAT, Funk S, Reiner RC, Faria NR, Pybus OG, Cauchemez S.

Epidemiol Infect. 2018 Nov 5:1-7. doi: 10.1017/S0950268818002881. [Epub ahead of print]

PMID:
30394230
2.

New highly diverse hepatitis C strains detected in sub-Saharan Africa have unknown susceptibility to direct-acting antiviral treatments.

Davis C, Mgomella GS, da Silva Filipe A, Frost EH, Giroux G, Hughes J, Hogan C, Kaleebu P, Asiki G, McLauchlan J, Niebel M, Ocama P, Pomila C, Pybus OG, Pépin J, Simmonds P, Singer JB, Sreenu VB, Wekesa C, Young EH, Murphy DG, Sandhu M, Thomson EC.

Hepatology. 2018 Nov 2. doi: 10.1002/hep.30342. [Epub ahead of print]

PMID:
30387174
3.

Molecular archaeoparasitology identifies cultural changes in the Medieval Hanseatic trading centre of Lübeck.

Flammer PG, Dellicour S, Preston SG, Rieger D, Warren S, Tan CKW, Nicholson R, Přichystalová R, Bleicher N, Wahl J, Faria NR, Pybus OG, Pollard M, Smith AL.

Proc Biol Sci. 2018 Oct 3;285(1888). pii: 20180991. doi: 10.1098/rspb.2018.0991.

4.

A naturally protective epitope of limited variability as an influenza vaccine target.

Thompson CP, Lourenço J, Walters AA, Obolski U, Edmans M, Palmer DS, Kooblall K, Carnell GW, O'Connor D, Bowden TA, Pybus OG, Pollard AJ, Temperton NJ, Lambe T, Gilbert SC, Gupta S.

Nat Commun. 2018 Sep 21;9(1):3859. doi: 10.1038/s41467-018-06228-8.

5.

Molecular Evolution, Diversity, and Adaptation of Influenza A(H7N9) Viruses in China.

Lu J, Raghwani J, Pryce R, Bowden TA, Thézé J, Huang S, Song Y, Zou L, Liang L, Bai R, Jing Y, Zhou P, Kang M, Yi L, Wu J, Pybus OG, Ke C.

Emerg Infect Dis. 2018 Oct;24(10):1795-1805. doi: 10.3201/eid2410.171063.

6.

Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl.

Wille M, Latorre-Margalef N, Tolf C, Halpin R, Wentworth D, Fouchier RAM, Raghwani J, Pybus OG, Olsen B, Waldenström J.

Virus Evol. 2018 Aug 14;4(2):vey025. doi: 10.1093/ve/vey025. eCollection 2018 Jul.

7.

Genomic and epidemiological monitoring of yellow fever virus transmission potential.

Faria NR, Kraemer MUG, Hill SC, Goes de Jesus J, Aguiar RS, Iani FCM, Xavier J, Quick J, du Plessis L, Dellicour S, Thézé J, Carvalho RDO, Baele G, Wu CH, Silveira PP, Arruda MB, Pereira MA, Pereira GC, Lourenço J, Obolski U, Abade L, Vasylyeva TI, Giovanetti M, Yi D, Weiss DJ, Wint GRW, Shearer FM, Funk S, Nikolay B, Fonseca V, Adelino TER, Oliveira MAA, Silva MVF, Sacchetto L, Figueiredo PO, Rezende IM, Mello EM, Said RFC, Santos DA, Ferraz ML, Brito MG, Santana LF, Menezes MT, Brindeiro RM, Tanuri A, Dos Santos FCP, Cunha MS, Nogueira JS, Rocco IM, da Costa AC, Komninakis SCV, Azevedo V, Chieppe AO, Araujo ESM, Mendonça MCL, Dos Santos CC, Dos Santos CD, Mares-Guia AM, Nogueira RMR, Sequeira PC, Abreu RG, Garcia MHO, Abreu AL, Okumoto O, Kroon EG, de Albuquerque CFC, Lewandowski K, Pullan ST, Carroll M, de Oliveira T, Sabino EC, Souza RP, Suchard MA, Lemey P, Trindade GS, Drumond BP, Filippis AMB, Loman NJ, Cauchemez S, Alcantara LCJ, Pybus OG.

Science. 2018 Aug 31;361(6405):894-899. doi: 10.1126/science.aat7115. Epub 2018 Aug 23.

PMID:
30139911
8.

Genomic surveillance of avian-origin influenza A viruses causing human disease.

Lam TT, Pybus OG.

Genome Med. 2018 Jun 27;10(1):50. doi: 10.1186/s13073-018-0560-3. Review.

9.

Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak.

Dellicour S, Baele G, Dudas G, Faria NR, Pybus OG, Suchard MA, Rambaut A, Lemey P.

Nat Commun. 2018 Jun 8;9(1):2222. doi: 10.1038/s41467-018-03763-2.

10.

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J, Li T, du Plessis L, Bouquet J, Kraemer MUG, Somasekar S, Yu G, de Cesare M, Balmaseda A, Kuan G, Harris E, Wu CH, Ansari MA, Bowden R, Faria NR, Yagi S, Messenger S, Brooks T, Stone M, Bloch EM, Busch M, Muñoz-Medina JE, González-Bonilla CR, Wolinsky S, López S, Arias CF, Bonsall D, Chiu CY, Pybus OG.

Cell Host Microbe. 2018 Jun 13;23(6):855-864.e7. doi: 10.1016/j.chom.2018.04.017. Epub 2018 May 24.

11.

Exact Bayesian inference for phylogenetic birth-death models.

Parag KV, Pybus OG.

Bioinformatics. 2018 Nov 1;34(21):3638-3645. doi: 10.1093/bioinformatics/bty337.

PMID:
29718104
12.

Westward Spread of Highly Pathogenic Avian Influenza A(H7N9) Virus among Humans, China.

Yang Q, Shi W, Zhang L, Xu Y, Xu J, Li S, Zhang J, Hu K, Ma C, Zhao X, Li X, Liu F, Tong X, Zhang G, Yu P, Pybus OG, Tian H.

Emerg Infect Dis. 2018 Jun;24(6):1095-1098. doi: 10.3201/eid2406.171135. Epub 2018 Jun 17.

13.

Genomic Insights into Zika Virus Emergence and Spread.

Grubaugh ND, Faria NR, Andersen KG, Pybus OG.

Cell. 2018 Mar 8;172(6):1160-1162. doi: 10.1016/j.cell.2018.02.027.

PMID:
29522736
14.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT.

Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8. Epub 2018 Feb 19.

15.

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

Vasylyeva TI, Liulchuk M, Friedman SR, Sazonova I, Faria NR, Katzourakis A, Babii N, Scherbinska A, Thézé J, Pybus OG, Smyrnov P, Mbisa JL, Paraskevis D, Hatzakis A, Magiorkinis G.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1051-1056. doi: 10.1073/pnas.1701447115. Epub 2018 Jan 16.

16.

Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient.

Brener J, Gall A, Hurst J, Batorsky R, Lavandier N, Chen F, Edwards A, Bolton C, Dsouza R, Allen T, Pybus OG, Kellam P, Matthews PC, Goulder PJR.

Retrovirology. 2018 Jan 16;15(1):7. doi: 10.1186/s12977-018-0390-9.

17.

The effect of RNA substitution models on viroid and RNA virus phylogenies.

Patiño Galindo JÁ, González Candelas F, Pybus OG.

Genome Biol Evol. 2018 Jan 9. doi: 10.1093/gbe/evx273. [Epub ahead of print]

18.

Genome-wide evolutionary dynamics of influenza B viruses on a global scale.

Langat P, Raghwani J, Dudas G, Bowden TA, Edwards S, Gall A, Bedford T, Rambaut A, Daniels RS, Russell CA, Pybus OG, McCauley J, Kellam P, Watson SJ.

PLoS Pathog. 2017 Dec 28;13(12):e1006749. doi: 10.1371/journal.ppat.1006749. eCollection 2017 Dec.

19.

The generation of a simian adenoviral vectored HCV vaccine encoding genetically conserved gene segments to target multiple HCV genotypes.

von Delft A, Donnison TA, Lourenço J, Hutchings C, Mullarkey CE, Brown A, Pybus OG, Klenerman P, Chinnakannan S, Barnes E.

Vaccine. 2018 Jan 4;36(2):313-321. doi: 10.1016/j.vaccine.2017.10.079. Epub 2017 Dec 2.

20.

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil.

Faria NR, da Costa AC, Lourenço J, Loureiro P, Lopes ME, Ribeiro R, Alencar CS, Kraemer MUG, Villabona-Arenas CJ, Wu CH, Thézé J, Khan K, Brent SE, Romano C, Delwart E, Custer B, Busch MP, Pybus OG, Sabino EC; NHLBI Recipient Epidemiology and Donor Evaluation Study-III (REDS-III).

Sci Rep. 2017 Nov 9;7(1):15216. doi: 10.1038/s41598-017-15152-8.

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