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Items: 1 to 20 of 311

1.

Single cell RNA-seq reveals profound transcriptional similarity between Barrett's oesophagus and oesophageal submucosal glands.

Owen RP, White MJ, Severson DT, Braden B, Bailey A, Goldin R, Wang LM, Ruiz-Puig C, Maynard ND, Green A, Piazza P, Buck D, Middleton MR, Ponting CP, Schuster-Böckler B, Lu X.

Nat Commun. 2018 Oct 15;9(1):4261. doi: 10.1038/s41467-018-06796-9.

2.

Comprehensively Profiling the Chromatin Architecture of Tissue Restricted Antigen Expression in Thymic Epithelial Cells Over Development.

Handel AE, Shikama-Dorn N, Zhanybekova S, Maio S, Graedel AN, Zuklys S, Ponting CP, Holländer GA.

Front Immunol. 2018 Sep 19;9:2120. doi: 10.3389/fimmu.2018.02120. eCollection 2018.

3.

The phenotypic spectrum of Xia-Gibbs syndrome.

Jiang Y, Wangler MF, McGuire AL, Lupski JR, Posey JE, Khayat MM, Murdock DR, Sanchez-Pulido L, Ponting CP, Xia F, Hunter JV, Meng Q, Murugan M, Gibbs RA.

Am J Med Genet A. 2018 Jun;176(6):1315-1326. doi: 10.1002/ajmg.a.38699. Epub 2018 Apr 25.

PMID:
29696776
4.

The long non-coding RNA Paupar promotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis.

Pavlaki I, Alammari F, Sun B, Clark N, Sirey T, Lee S, Woodcock DJ, Ponting CP, Szele FG, Vance KW.

EMBO J. 2018 May 15;37(10). pii: e98219. doi: 10.15252/embj.201798219. Epub 2018 Apr 16.

5.

Complexities of post-transcriptional regulation and the modeling of ceRNA crosstalk.

Smillie CL, Sirey T, Ponting CP.

Crit Rev Biochem Mol Biol. 2018 Jun;53(3):231-245. doi: 10.1080/10409238.2018.1447542. Epub 2018 Mar 23.

6.

The Human Cell Atlas.

Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants.

Elife. 2017 Dec 5;6. pii: e27041. doi: 10.7554/eLife.27041.

7.

TMEM132: an ancient architecture of cohesin and immunoglobulin domains define a new family of neural adhesion molecules.

Sanchez-Pulido L, Ponting CP.

Bioinformatics. 2018 Mar 1;34(5):721-724. doi: 10.1093/bioinformatics/btx689.

8.

Biological function in the twilight zone of sequence conservation.

Ponting CP.

BMC Biol. 2017 Aug 16;15(1):71. doi: 10.1186/s12915-017-0411-5. Review.

9.

ELIXIR-UK role in bioinformatics training at the national level and across ELIXIR.

Larcombe L, Hendricusdottir R, Attwood TK, Bacall F, Beard N, Bellis LJ, Dunn WB, Hancock JM, Nenadic A, Orengo C, Overduin B, Sansone SA, Thurston M, Viant MR, Winder CL, Goble CA, Ponting CP, Rustici G.

F1000Res. 2017 Jun 21;6. pii: ELIXIR-952. doi: 10.12688/f1000research.11837.1. eCollection 2017.

10.

An open and transparent process to select ELIXIR Node Services as implemented by ELIXIR-UK.

Hancock JM, Game A, Ponting CP, Goble CA.

Version 2. F1000Res. 2016 Dec 21 [revised 2017 Jan 1];5. pii: ELIXIR-2894. doi: 10.12688/f1000research.10473.2. eCollection 2016.

11.

Identification of genetic variants affecting vitamin D receptor binding and associations with autoimmune disease.

Gallone G, Haerty W, Disanto G, Ramagopalan SV, Ponting CP, Berlanga-Taylor AJ.

Hum Mol Genet. 2017 Jun 1;26(11):2164-2176. doi: 10.1093/hmg/ddx092.

12.

Whole-exome sequencing of 228 patients with sporadic Parkinson's disease.

Sandor C, Honti F, Haerty W, Szewczyk-Krolikowski K, Tomlinson P, Evetts S, Millin S, Keane T, McCarthy SA, Durbin R, Talbot K, Hu M, Webber C, Ponting CP, Wade-Martins R.

Sci Rep. 2017 Jan 24;7:41188. doi: 10.1038/srep41188.

13.

Single-Cell Multiomics: Multiple Measurements from Single Cells.

Macaulay IC, Ponting CP, Voet T.

Trends Genet. 2017 Feb;33(2):155-168. doi: 10.1016/j.tig.2016.12.003. Epub 2017 Jan 13. Review.

14.

Functional RNA classes: a matter of time?

Bedoya-Reina OC, Ponting CP.

Nat Struct Mol Biol. 2017 Jan 5;24(1):7-8. doi: 10.1038/nsmb.3354. No abstract available.

PMID:
28054565
15.

Insights into the post-transcriptional regulation of the mitochondrial electron transport chain.

Sirey TM, Ponting CP.

Biochem Soc Trans. 2016 Oct 15;44(5):1491-1498. Review.

16.

Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.

Handel AE, Gallone G, Zameel Cader M, Ponting CP.

Hum Mol Genet. 2017 Jan 1;26(1):79-89. doi: 10.1093/hmg/ddw369.

17.

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq.

Macaulay IC, Teng MJ, Haerty W, Kumar P, Ponting CP, Voet T.

Nat Protoc. 2016 Nov;11(11):2081-103. doi: 10.1038/nprot.2016.138. Epub 2016 Sep 29.

PMID:
27685099
18.

The role of ADP-ribosylation in regulating DNA interstrand crosslink repair.

Gunn AR, Banos-Pinero B, Paschke P, Sanchez-Pulido L, Ariza A, Day J, Emrich M, Leys D, Ponting CP, Ahel I, Lakin ND.

J Cell Sci. 2016 Oct 15;129(20):3845-3858. Epub 2016 Sep 1.

19.

Foxn1 regulates key target genes essential for T cell development in postnatal thymic epithelial cells.

Žuklys S, Handel A, Zhanybekova S, Govani F, Keller M, Maio S, Mayer CE, Teh HY, Hafen K, Gallone G, Barthlott T, Ponting CP, Holländer GA.

Nat Immunol. 2016 Oct;17(10):1206-1215. doi: 10.1038/ni.3537. Epub 2016 Aug 22.

20.

Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases.

Chan MC, Ilott NE, Schödel J, Sims D, Tumber A, Lippl K, Mole DR, Pugh CW, Ratcliffe PJ, Ponting CP, Schofield CJ.

J Biol Chem. 2016 Sep 23;291(39):20661-73. doi: 10.1074/jbc.M116.749291. Epub 2016 Aug 8.

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