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Items: 1 to 20 of 24

1.

Multicomponent crystals of gliclazide and tromethamine: preparation, physico-chemical, and pharmaceutical characterization.

Bruni G, Berbenni V, Maggi L, Mustarelli P, Friuli V, Ferrara C, Pardi F, Castagna F, Girella A, Milanese C, Marini A.

Drug Dev Ind Pharm. 2018 Feb;44(2):243-250. doi: 10.1080/03639045.2017.1386208. Epub 2017 Oct 17.

PMID:
28956461
2.

Rearrangement moves on rooted phylogenetic networks.

Gambette P, van Iersel L, Jones M, Lafond M, Pardi F, Scornavacca C.

PLoS Comput Biol. 2017 Aug 1;13(8):e1005611. doi: 10.1371/journal.pcbi.1005611. eCollection 2017 Aug.

3.

Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network?

Gambette P, van Iersel L, Kelk S, Pardi F, Scornavacca C.

Bull Math Biol. 2016 Sep;78(9):1773-1795. Epub 2016 Sep 22.

PMID:
27659024
4.

Fast and accurate branch lengths estimation for phylogenomic trees.

Binet M, Gascuel O, Scornavacca C, Douzery EJ, Pardi F.

BMC Bioinformatics. 2016 Jan 7;17:23. doi: 10.1186/s12859-015-0821-8.

5.

Reconstructible phylogenetic networks: do not distinguish the indistinguishable.

Pardi F, Scornavacca C.

PLoS Comput Biol. 2015 Apr 7;11(4):e1004135. doi: 10.1371/journal.pcbi.1004135. eCollection 2015 Apr.

6.

Combinatorics of distance-based tree inference.

Pardi F, Gascuel O.

Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16443-8. doi: 10.1073/pnas.1118368109. Epub 2012 Sep 25.

7.

Robustness of phylogenetic inference based on minimum evolution.

Pardi F, Guillemot S, Gascuel O.

Bull Math Biol. 2010 Oct;72(7):1820-39. doi: 10.1007/s11538-010-9510-y. Epub 2010 May 7.

PMID:
20449671
8.

Approximate maximum parsimony and ancestral maximum likelihood.

Alon N, Chor B, Pardi F, Rapoport A.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Jan-Mar;7(1):183-7. doi: 10.1109/TCBB.2008.13.

PMID:
20150680
9.

Budgeted phylogenetic diversity on circular split systems.

Minh BQ, Pardi F, Klaere S, von Haeseler A.

IEEE/ACM Trans Comput Biol Bioinform. 2009 Jan-Mar;6(1):22-9. doi: 10.1109/TCBB.2008.54.

PMID:
19179696
10.

Distribution of phylogenetic diversity under random extinction.

Faller B, Pardi F, Steel M.

J Theor Biol. 2008 Mar 21;251(2):286-96. doi: 10.1016/j.jtbi.2007.11.034. Epub 2007 Dec 8.

PMID:
18199459
11.

Determination and validation of principal gene products.

Tress ML, Wesselink JJ, Frankish A, López G, Goldman N, Löytynoja A, Massingham T, Pardi F, Whelan S, Harrow J, Valencia A.

Bioinformatics. 2008 Jan 1;24(1):11-7. Epub 2007 Nov 15.

12.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

13.

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.

Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Hinrichs A, Trumbower H, Clawson H, Zweig A, Kuhn RM, Barber G, Harte R, Karolchik D, Field MA, Moore RA, Matthewson CA, Schein JE, Marra MA, Antonarakis SE, Batzoglou S, Goldman N, Hardison R, Haussler D, Miller W, Pachter L, Green ED, Sidow A.

Genome Res. 2007 Jun;17(6):760-74.

14.

Resource-aware taxon selection for maximizing phylogenetic diversity.

Pardi F, Goldman N.

Syst Biol. 2007 Jun;56(3):431-44. Review.

PMID:
17558965
15.

Species choice for comparative genomics: being greedy works.

Pardi F, Goldman N.

PLoS Genet. 2005 Dec;1(6):e71. Epub 2005 Dec 2.

16.

SNP selection for association studies: maximizing power across SNP choice and study size.

Pardi F, Lewis CM, Whittaker JC.

Ann Hum Genet. 2005 Nov;69(Pt 6):733-46.

17.

GSMA: software implementation of the genome search meta-analysis method.

Pardi F, Levinson DF, Lewis CM.

Bioinformatics. 2005 Dec 15;21(24):4430-1. Epub 2005 Oct 25.

PMID:
16249265
18.

Meta-analysis of genome scans of age-related macular degeneration.

Fisher SA, Abecasis GR, Yashar BM, Zareparsi S, Swaroop A, Iyengar SK, Klein BE, Klein R, Lee KE, Majewski J, Schultz DW, Klein ML, Seddon JM, Santangelo SL, Weeks DE, Conley YP, Mah TS, Schmidt S, Haines JL, Pericak-Vance MA, Gorin MB, Schulz HL, Pardi F, Lewis CM, Weber BH.

Hum Mol Genet. 2005 Aug 1;14(15):2257-64. Epub 2005 Jun 29.

19.

On the structural differences between markers and genomic AC microsatellites.

Pardi F, Sibly RM, Wilkinson MJ, Whittaker JC.

J Mol Evol. 2005 May;60(5):688-93.

PMID:
15983876
20.

The role of transsphenoidal surgery in the treatment of craniopharyngiomas.

Maira G, Anile C, Albanese A, Cabezas D, Pardi F, Vignati A.

J Neurosurg. 2004 Mar;100(3):445-51.

PMID:
15035280

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