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The Ensembl Genome Browser: Strategies for Accessing Eukaryotic Genome Data.

Newman V, Moore B, Sparrow H, Perry E.

Methods Mol Biol. 2018;1757:115-139. doi: 10.1007/978-1-4939-7737-6_6.


Ensembl 2018.

Zerbino DR, Achuthan P, Akanni W, Amode MR, Barrell D, Bhai J, Billis K, Cummins C, Gall A, Girón CG, Gil L, Gordon L, Haggerty L, Haskell E, Hourlier T, Izuogu OG, Janacek SH, Juettemann T, To JK, Laird MR, Lavidas I, Liu Z, Loveland JE, Maurel T, McLaren W, Moore B, Mudge J, Murphy DN, Newman V, Nuhn M, Ogeh D, Ong CK, Parker A, Patricio M, Riat HS, Schuilenburg H, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Zadissa A, Frankish A, Hunt SE, Kostadima M, Langridge N, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Aken BL, Cunningham F, Yates A, Flicek P.

Nucleic Acids Res. 2018 Jan 4;46(D1):D754-D761. doi: 10.1093/nar/gkx1098.


Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

Kersey PJ, Allen JE, Allot A, Barba M, Boddu S, Bolt BJ, Carvalho-Silva D, Christensen M, Davis P, Grabmueller C, Kumar N, Liu Z, Maurel T, Moore B, McDowall MD, Maheswari U, Naamati G, Newman V, Ong CK, Paulini M, Pedro H, Perry E, Russell M, Sparrow H, Tapanari E, Taylor K, Vullo A, Williams G, Zadissia A, Olson A, Stein J, Wei S, Tello-Ruiz M, Ware D, Luciani A, Potter S, Finn RD, Urban M, Hammond-Kosack KE, Bolser DM, De Silva N, Howe KL, Langridge N, Maslen G, Staines DM, Yates A.

Nucleic Acids Res. 2018 Jan 4;46(D1):D802-D808. doi: 10.1093/nar/gkx1011.


Ensembl 2017.

Aken BL, Achuthan P, Akanni W, Amode MR, Bernsdorff F, Bhai J, Billis K, Carvalho-Silva D, Cummins C, Clapham P, Gil L, Girón CG, Gordon L, Hourlier T, Hunt SE, Janacek SH, Juettemann T, Keenan S, Laird MR, Lavidas I, Maurel T, McLaren W, Moore B, Murphy DN, Nag R, Newman V, Nuhn M, Ong CK, Parker A, Patricio M, Riat HS, Sheppard D, Sparrow H, Taylor K, Thormann A, Vullo A, Walts B, Wilder SP, Zadissa A, Kostadima M, Martin FJ, Muffato M, Perry E, Ruffier M, Staines DM, Trevanion SJ, Cunningham F, Yates A, Zerbino DR, Flicek P.

Nucleic Acids Res. 2017 Jan 4;45(D1):D635-D642. doi: 10.1093/nar/gkw1104. Epub 2016 Nov 28.


Bringing Home to the Hospital: Development of the Reflection Room and Provider Perspectives.

Vesely C, Newman V, Winters Y, Flori H.

J Palliat Med. 2017 Feb;20(2):120-126. doi: 10.1089/jpm.2016.0070. Epub 2016 Nov 4.


Maternal dietary intake during pregnancy has longstanding consequences for the health of her offspring.

Wood-Bradley RJ, Henry SL, Vrselja A, Newman V, Armitage JA.

Can J Physiol Pharmacol. 2013 Jun;91(6):412-20. doi: 10.1139/cjpp-2012-0352. Epub 2013 Apr 17. Review.


Our land, our language: connecting dispossession and health equity in an indigenous context.

Brown HJ, McPherson G, Peterson R, Newman V, Cranmer B.

Can J Nurs Res. 2012 Jun;44(2):44-63.


Mutant p53 cooperates with ETS2 to promote etoposide resistance.

Do PM, Varanasi L, Fan S, Li C, Kubacka I, Newman V, Chauhan K, Daniels SR, Boccetta M, Garrett MR, Li R, Martinez LA.

Genes Dev. 2012 Apr 15;26(8):830-45. doi: 10.1101/gad.181685.111.


Lung aeration changes after lung recruitment in children with acute lung injury: a feasibility study.

Boriosi JP, Cohen RA, Summers E, Sapru A, Hanson JH, Gildengorin G, Newman V, Flori HR.

Pediatr Pulmonol. 2012 Aug;47(8):771-9. doi: 10.1002/ppul.22508. Epub 2012 Feb 1.


Soy food consumption and breast cancer prognosis.

Caan BJ, Natarajan L, Parker B, Gold EB, Thomson C, Newman V, Rock CL, Pu M, Al-Delaimy W, Pierce JP.

Cancer Epidemiol Biomarkers Prev. 2011 May;20(5):854-8. doi: 10.1158/1055-9965.EPI-10-1041. Epub 2011 Feb 25.


Efficacy and safety of lung recruitment in pediatric patients with acute lung injury.

Boriosi JP, Sapru A, Hanson JH, Asselin J, Gildengorin G, Newman V, Sabato K, Flori HR.

Pediatr Crit Care Med. 2011 Jul;12(4):431-6. doi: 10.1097/PCC.0b013e3181fe329d.


Deep brain stimulation and surgery.

Ramaiah VK, Newman V.

Anaesthesia. 2009 Apr;64(4):451-2. doi: 10.1111/j.1365-2044.2009.05904.x. No abstract available.


The Men's Eating and Living (MEAL) study: a Cancer and Leukemia Group B pilot trial of dietary intervention for the treatment of prostate cancer.

Parsons JK, Newman V, Mohler JL, Pierce JP, Paskett E, Marshall J; Cancer and Leukemia Group B.

Urology. 2008 Sep;72(3):633-7. doi: 10.1016/j.urology.2007.11.050. Epub 2008 Feb 15.


The transcription factor Eyes absent is a protein tyrosine phosphatase.

Tootle TL, Silver SJ, Davies EL, Newman V, Latek RR, Mills IA, Selengut JD, Parlikar BE, Rebay I.

Nature. 2003 Nov 20;426(6964):299-302.


Maternally administered dexamethasone transiently increases apoptosis in lungs of fetal rats.

Scavo LM, Newman V, Ertsey R, Chapin CJ, Kitterman JA.

Exp Lung Res. 2003 Jun;29(4):211-26.


Measuring dietary change in a diet intervention trial: comparing food frequency questionnaire and dietary recalls.

Thomson CA, Giuliano A, Rock CL, Ritenbaugh CK, Flatt SW, Faerber S, Newman V, Caan B, Graver E, Hartz V, Whitacre R, Parker F, Pierce JP, Marshall JR.

Am J Epidemiol. 2003 Apr 15;157(8):754-62.


A randomized trial of the effect of a plant-based dietary pattern on additional breast cancer events and survival: the Women's Healthy Eating and Living (WHEL) Study.

Pierce JP, Faerber S, Wright FA, Rock CL, Newman V, Flatt SW, Kealey S, Jones VE, Caan BJ, Gold EB, Haan M, Hollenbach KA, Jones L, Marshall JR, Ritenbaugh C, Stefanick ML, Thomson C, Wasserman L, Natarajan L, Thomas RG, Gilpin EA; Women's Healthy Eating and Living (WHEL) study group.

Control Clin Trials. 2002 Dec;23(6):728-56.


Amount of raw vegetables and fruits needed to yield 1 c juice.

Newman V, Faerber S, Zoumas-Morse C, Rock CL.

J Am Diet Assoc. 2002 Jul;102(7):975-7. No abstract available.


Increased fruit, vegetable and fiber intake and lower fat intake reported among women previously treated for invasive breast cancer.

Thomson CA, Flatt SW, Rock CL, Ritenbaugh C, Newman V, Pierce JP.

J Am Diet Assoc. 2002 Jun;102(6):801-8.


High dietary fiber consumption is not associated with gastrointestinal discomfort in a diet intervention trial.

McEligot AJ, Gilpin EA, Rock CL, Newman V, Hollenbach KA, Thomson CA, Pierce JP.

J Am Diet Assoc. 2002 Apr;102(4):549-51. No abstract available.


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