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Items: 1 to 20 of 33

1.

Genome-Wide Study of mRNA Isoform Half-Lives.

Geisberg JV, Moqtaderi Z.

Methods Mol Biol. 2016;1358:317-23. doi: 10.1007/978-1-4939-3067-8_20.

PMID:
26463393
2.

Mapping 3' mRNA isoforms on a genomic scale.

Jin Y, Geisberg JV, Moqtaderi Z, Ji Z, Hoque M, Tian B, Struhl K.

Curr Protoc Mol Biol. 2015 Apr 1;110:4.23.1-17. doi: 10.1002/0471142727.mb0423s110.

3.
4.

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K.

Cell. 2014 Feb 13;156(4):812-24. doi: 10.1016/j.cell.2013.12.026.

5.

Construction of mutant alleles in Saccharomyces cerevisiae without cloning: overview and the delitto perfetto method.

Moqtaderi Z, Geisberg JV.

Curr Protoc Mol Biol. 2013 Oct 11;104:Unit 13.10C. doi: 10.1002/0471142727.mb1310cs104.

PMID:
24510296
6.

Species-specific factors mediate extensive heterogeneity of mRNA 3' ends in yeasts.

Moqtaderi Z, Geisberg JV, Jin Y, Fan X, Struhl K.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11073-8. doi: 10.1073/pnas.1309384110. Epub 2013 Jun 17.

7.

Multiplex Illumina sequencing using DNA barcoding.

Wong KH, Jin Y, Moqtaderi Z.

Curr Protoc Mol Biol. 2013;Chapter 7:Unit 7.11.. doi: 10.1002/0471142727.mb0711s101.

PMID:
23288465
8.

SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation.

Barber MF, Michishita-Kioi E, Xi Y, Tasselli L, Kioi M, Moqtaderi Z, Tennen RI, Paredes S, Young NL, Chen K, Struhl K, Garcia BA, Gozani O, Li W, Chua KF.

Nature. 2012 Jul 5;487(7405):114-8. doi: 10.1038/nature11043.

9.

Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae.

Esberg A, Moqtaderi Z, Fan X, Lu J, Struhl K, Byström A.

PLoS One. 2011;6(6):e20829. doi: 10.1371/journal.pone.0020829. Epub 2011 Jun 10.

10.

High-throughput sequencing reveals a simple model of nucleosome energetics.

Locke G, Tolkunov D, Moqtaderi Z, Struhl K, Morozov AV.

Proc Natl Acad Sci U S A. 2010 Dec 7;107(49):20998-1003. doi: 10.1073/pnas.1003838107. Epub 2010 Nov 17.

11.

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation.

Fan X, Moqtaderi Z, Jin Y, Zhang Y, Liu XS, Struhl K.

Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):17945-50. doi: 10.1073/pnas.1012674107. Epub 2010 Oct 4.

12.

Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.".

Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K.

Nat Struct Mol Biol. 2010 Aug;17(8):920-3. No abstract available.

13.

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells.

Moqtaderi Z, Wang J, Raha D, White RJ, Snyder M, Weng Z, Struhl K.

Nat Struct Mol Biol. 2010 May;17(5):635-40. doi: 10.1038/nsmb.1794. Epub 2010 Apr 25.

14.

Close association of RNA polymerase II and many transcription factors with Pol III genes.

Raha D, Wang Z, Moqtaderi Z, Wu L, Zhong G, Gerstein M, Struhl K, Snyder M.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3639-44. doi: 10.1073/pnas.0911315106. Epub 2010 Feb 5.

15.

Mapping accessible chromatin regions using Sono-Seq.

Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, Lefrançois P, Struhl K, Gerstein M, Snyder M.

Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14926-31. doi: 10.1073/pnas.0905443106. Epub 2009 Aug 18.

16.

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.

Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K.

Nat Struct Mol Biol. 2009 Aug;16(8):847-52. doi: 10.1038/nsmb.1636. Epub 2009 Jul 20.

17.

Expanding the repertoire of plasmids for PCR-mediated epitope tagging in yeast.

Moqtaderi Z, Struhl K.

Yeast. 2008 Apr;25(4):287-92. doi: 10.1002/yea.1581.

18.

Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo.

Aparicio O, Geisberg JV, Sekinger E, Yang A, Moqtaderi Z, Struhl K.

Curr Protoc Mol Biol. 2005 Feb;Chapter 21:Unit 21.3. doi: 10.1002/0471142727.mb2103s69.

PMID:
18265358
19.

Defining in vivo targets of nuclear proteins by chromatin immunoprecipitation and microarray analysis.

Moqtaderi Z, Struhl K.

Curr Protoc Mol Biol. 2004 Nov;Chapter 21:Unit 21.9. doi: 10.1002/0471142727.mb2109s68.

PMID:
18265347
20.

Manipulation of cloned yeast DNA.

Lundblad V, Hartzog G, Moqtaderi Z.

Curr Protoc Mol Biol. 2001 May;Chapter 13:Unit13.10. doi: 10.1002/0471142727.mb1310s39.

PMID:
18265094

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