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Items: 16

1.

A high-coverage Neandertal genome from Vindija Cave in Croatia.

Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kućan Ž, Gušić I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S.

Science. 2017 Nov 3;358(6363):655-658. doi: 10.1126/science.aao1887. Epub 2017 Oct 5.

PMID:
28982794
2.

Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development.

Mora-Bermúdez F, Badsha F, Kanton S, Camp JG, Vernot B, Köhler K, Voigt B, Okita K, Maricic T, He Z, Lachmann R, Pääbo S, Treutlein B, Huttner WB.

Elife. 2016 Sep 26;5. pii: e18683. doi: 10.7554/eLife.18683.

3.

Ladies First: Coerced Mating in a Fiddler Crab.

Painting CJ, Splinter W, Callander S, Maricic T, Peso M, Backwell PR.

PLoS One. 2016 Jun 15;11(6):e0155707. doi: 10.1371/journal.pone.0155707. eCollection 2016.

4.

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.

Renaud G, Stenzel U, Maricic T, Wiebe V, Kelso J.

Bioinformatics. 2015 Mar 1;31(5):770-2. doi: 10.1093/bioinformatics/btu719. Epub 2014 Oct 30.

5.

A recent evolutionary change affects a regulatory element in the human FOXP2 gene.

Maricic T, Günther V, Georgiev O, Gehre S, Curlin M, Schreiweis C, Naumann R, Burbano HA, Meyer M, Lalueza-Fox C, de la Rasilla M, Rosas A, Gajovic S, Kelso J, Enard W, Schaffner W, Pääbo S.

Mol Biol Evol. 2013 Apr;30(4):844-52. doi: 10.1093/molbev/mss271. Epub 2012 Nov 28.

6.

Analysis of human accelerated DNA regions using archaic hominin genomes.

Burbano HA, Green RE, Maricic T, Lalueza-Fox C, de la Rasilla M, Rosas A, Kelso J, Pollard KS, Lachmann M, Pääbo S.

PLoS One. 2012;7(3):e32877. doi: 10.1371/journal.pone.0032877. Epub 2012 Mar 7.

7.

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, Mallick S, Li H, Meyer M, Eichler EE, Stoneking M, Richards M, Talamo S, Shunkov MV, Derevianko AP, Hublin JJ, Kelso J, Slatkin M, Pääbo S.

Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710.

8.

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products.

Maricic T, Whitten M, Pääbo S.

PLoS One. 2010 Nov 16;5(11):e14004. doi: 10.1371/journal.pone.0014004.

9.

Targeted investigation of the Neandertal genome by array-based sequence capture.

Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, Fortea J, Rosas A, Lachmann M, Hannon GJ, Pääbo S.

Science. 2010 May 7;328(5979):723-5. doi: 10.1126/science.1188046.

10.

A draft sequence of the Neandertal genome.

Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S.

Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021.

11.

A complete mtDNA genome of an early modern human from Kostenki, Russia.

Krause J, Briggs AW, Kircher M, Maricic T, Zwyns N, Derevianko A, Pääbo S.

Curr Biol. 2010 Feb 9;20(3):231-6. doi: 10.1016/j.cub.2009.11.068. Epub 2009 Dec 31.

12.

Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources.

Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Pääbo S.

J Vis Exp. 2009 Sep 3;(31):1573. doi: 10.3791/1573.

13.

Targeted retrieval and analysis of five Neandertal mtDNA genomes.

Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Schmitz R, Doronichev VB, Golovanova LV, de la Rasilla M, Fortea J, Rosas A, Pääbo S.

Science. 2009 Jul 17;325(5938):318-21. doi: 10.1126/science.1174462.

14.
15.

A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing.

Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajković D, Kućan Z, Gusić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S.

Cell. 2008 Aug 8;134(3):416-26. doi: 10.1016/j.cell.2008.06.021.

16.

From micrograms to picograms: quantitative PCR reduces the material demands of high-throughput sequencing.

Meyer M, Briggs AW, Maricic T, Höber B, Höffner B, Krause J, Weihmann A, Pääbo S, Hofreiter M.

Nucleic Acids Res. 2008 Jan;36(1):e5. Epub 2007 Dec 15.

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