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Items: 1 to 20 of 22

1.

Core non-coding RNAs of Piscirickettsia salmonis.

Segovia C, Arias-Carrasco R, Yañez AJ, Maracaja-Coutinho V, Santander J.

PLoS One. 2018 May 16;13(5):e0197206. doi: 10.1371/journal.pone.0197206. eCollection 2018.

2.

Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteño Maize from Atacama Desert.

Huanca-Mamani W, Arias-Carrasco R, Cárdenas-Ninasivincha S, Rojas-Herrera M, Sepúlveda-Hermosilla G, Caris-Maldonado JC, Bastías E, Maracaja-Coutinho V.

Genes (Basel). 2018 Mar 20;9(3). pii: E170. doi: 10.3390/genes9030170.

3.

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci.

Amaral PP, Leonardi T, Han N, Viré E, Gascoigne DK, Arias-Carrasco R, Büscher M, Pandolfini L, Zhang A, Pluchino S, Maracaja-Coutinho V, Nakaya HI, Hemberg M, Shiekhattar R, Enright AJ, Kouzarides T.

Genome Biol. 2018 Mar 15;19(1):32. doi: 10.1186/s13059-018-1405-5.

4.

A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.

Orell A, Tripp V, Aliaga-Tobar V, Albers SV, Maracaja-Coutinho V, Randau L.

Nucleic Acids Res. 2018 May 18;46(9):4794-4806. doi: 10.1093/nar/gky144.

5.

Genome-wide circulating microRNA expression profiling reveals potential biomarkers for amyotrophic lateral sclerosis.

Matamala JM, Arias-Carrasco R, Sanchez C, Uhrig M, Bargsted L, Matus S, Maracaja-Coutinho V, Abarzua S, van Zundert B, Verdugo R, Manque P, Hetz C.

Neurobiol Aging. 2018 Apr;64:123-138. doi: 10.1016/j.neurobiolaging.2017.12.020. Epub 2017 Dec 29.

PMID:
29458840
6.

CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.

Russo PST, Ferreira GR, Cardozo LE, Bürger MC, Arias-Carrasco R, Maruyama SR, Hirata TDC, Lima DS, Passos FM, Fukutani KF, Lever M, Silva JS, Maracaja-Coutinho V, Nakaya HI.

BMC Bioinformatics. 2018 Feb 20;19(1):56. doi: 10.1186/s12859-018-2053-1.

7.

StructRNAfinder: an automated pipeline and web server for RNA families prediction.

Arias-Carrasco R, Vásquez-Morán Y, Nakaya HI, Maracaja-Coutinho V.

BMC Bioinformatics. 2018 Feb 17;19(1):55. doi: 10.1186/s12859-018-2052-2.

8.

LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis.

Torres F, Arias-Carrasco R, Caris-Maldonado JC, Barral A, Maracaja-Coutinho V, De Queiroz ATL.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax047.

9.

Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups.

Nourdin-Galindo G, Sánchez P, Molina CF, Espinoza-Rojas DA, Oliver C, Ruiz P, Vargas-Chacoff L, Cárcamo JG, Figueroa JE, Mancilla M, Maracaja-Coutinho V, Yañez AJ.

Front Cell Infect Microbiol. 2017 Oct 31;7:459. doi: 10.3389/fcimb.2017.00459. eCollection 2017.

10.

miRQuest: integration of tools on a Web server for microRNA research.

Aguiar RR, Ambrosio LA, Sepúlveda-Hermosilla G, Maracaja-Coutinho V, Paschoal AR.

Genet Mol Res. 2016 Mar 28;15(1). doi: 10.4238/gmr.15016861.

11.

A Guide to Scientific Crowdfunding.

Vachelard J, Gambarra-Soares T, Augustini G, Riul P, Maracaja-Coutinho V.

PLoS Biol. 2016 Feb 17;14(2):e1002373. doi: 10.1371/journal.pbio.1002373. eCollection 2016 Feb.

12.

A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm.

de Brito DM, Maracaja-Coutinho V, de Farias ST, Batista LV, do Rêgo TG.

PLoS One. 2016 Jan 5;11(1):e0146352. doi: 10.1371/journal.pone.0146352. eCollection 2016.

13.

Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Bacteriophage f18SE, Isolated in Chile.

Segovia C, Vasquez I, Maracaja-Coutinho V, Robeson J, Santander J.

Genome Announc. 2015 Oct 8;3(5). pii: e00600-15. doi: 10.1128/genomeA.00600-15.

14.

Deep sequencing reveals the complete genome and evidence for transcriptional activity of the first virus-like sequences identified in Aristotelia chilensis (Maqui Berry).

Villacreses J, Rojas-Herrera M, Sánchez C, Hewstone N, Undurraga SF, Alzate JF, Manque P, Maracaja-Coutinho V, Polanco V.

Viruses. 2015 Apr 3;7(4):1685-99. doi: 10.3390/v7041685.

15.

Draft Genome Sequence of Virulent Strain AUSTRAL-005 of Piscirickettsia salmonis, the Etiological Agent of Piscirickettsiosis.

Yañez AJ, Molina C, Haro RE, Sanchez P, Isla A, Mendoza J, Rojas-Herrera M, Trombert A, Silva AX, Cárcamo JG, Figueroa J, Polanco V, Manque P, Maracaja-Coutinho V, Olavarría VH.

Genome Announc. 2014 Oct 16;2(5). pii: e00990-14. doi: 10.1128/genomeA.00990-14.

16.

Draft Genome of Chilean Honeybee (Apis mellifera) Gut Strain Lactobacillus kunkeei MP2.

Olmos A, Henríquez-Piskulich P, Sanchez C, Rojas-Herrera M, Moreno-Pino M, Gómez M, Rodríguez Da Silva R, Maracaja-Coutinho V, Aldea P, Trombert AN.

Genome Announc. 2014 Oct 9;2(5). pii: e01013-14. doi: 10.1128/genomeA.01013-14.

17.

Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations.

Fachel AA, Tahira AC, Vilella-Arias SA, Maracaja-Coutinho V, Gimba ER, Vignal GM, Campos FS, Reis EM, Verjovski-Almeida S.

Mol Cancer. 2013 Nov 15;12(1):140. doi: 10.1186/1476-4598-12-140.

18.

Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases.

Paschoal AR, Maracaja-Coutinho V, Setubal JC, Simões ZL, Verjovski-Almeida S, Durham AM.

RNA Biol. 2012 Mar;9(3):274-82. doi: 10.4161/rna.19352. Epub 2012 Mar 1. Review.

PMID:
22336709
19.

Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer.

Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC, Reis EM.

Mol Cancer. 2011 Nov 13;10:141. doi: 10.1186/1476-4598-10-141.

20.

Non-coding RNAs in schistosomes: an unexplored world.

Oliveira KC, Carvalho ML, Maracaja-Coutinho V, Kitajima JP, Verjovski-Almeida S.

An Acad Bras Cienc. 2011 Jun;83(2):673-94. Review.

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