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Items: 1 to 20 of 41


Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock.

Vinayachandran V, Reja R, Rossi MJ, Park B, Rieber L, Mittal C, Mahony S, Pugh BF.

Genome Res. 2018 Feb 14. doi: 10.1101/gr.226761.117. [Epub ahead of print]


The Vietnamese population of <i>Megophrys</i> <i>kuatunensis</i> (Amphibia: Megophryidae) represents a new species of Asian horned frog from Vietnam and southern China.

Tapley B, Cutajar T, Mahony S, Nguyen CT, Dau VQ, Nguyen TT, Luong HV, Rowley JJL.

Zootaxa. 2017 Nov 8;4344(3):465-492. doi: 10.11646/zootaxa.4344.3.3.


Deconvolving sequence features that discriminate between overlapping regulatory annotations.

Kakumanu A, Velasco S, Mazzoni E, Mahony S.

PLoS Comput Biol. 2017 Oct 19;13(10):e1005795. doi: 10.1371/journal.pcbi.1005795. eCollection 2017 Oct.


miniMDS: 3D structural inference from high-resolution Hi-C data.

Rieber L, Mahony S.

Bioinformatics. 2017 Jul 15;33(14):i261-i266. doi: 10.1093/bioinformatics/btx271.


Molecular, morphological and acoustic assessment of the genus Ophryophryne (Anura, Megophryidae) from Langbian Plateau, southern Vietnam, with description of a new species.

Poyarkov NA Jr, Duong TV, Orlov NL, Gogoleva SS, Vassilieva AB, Nguyen LT, Nguyen VDH, Nguyen SN, Che J, Mahony S.

Zookeys. 2017 May 3;(672):49-120. doi: 10.3897/zookeys.672.10624. eCollection 2017.


Evolutionary History of the Asian Horned Frogs (Megophryinae): Integrative Approaches to Timetree Dating in the Absence of a Fossil Record.

Mahony S, Foley NM, Biju SD, Teeling EC.

Mol Biol Evol. 2017 Mar 1;34(3):744-771. doi: 10.1093/molbev/msw267.


A Multi-step Transcriptional and Chromatin State Cascade Underlies Motor Neuron Programming from Embryonic Stem Cells.

Velasco S, Ibrahim MM, Kakumanu A, Garipler G, Aydin B, Al-Sayegh MA, Hirsekorn A, Abdul-Rahman F, Satija R, Ohler U, Mahony S, Mazzoni EO.

Cell Stem Cell. 2017 Feb 2;20(2):205-217.e8. doi: 10.1016/j.stem.2016.11.006. Epub 2016 Dec 8.


An Irish outbreak of New Delhi metallo-β-lactamase (NDM)-1 carbapenemase-producing Enterobacteriaceae: increasing but unrecognized prevalence.

O'Connor C, Cormican M, Boo TW, McGrath E, Slevin B, O'Gorman A, Commane M, Mahony S, O'Donovan E, Powell J, Monahan R, Finnegan C, Kiernan MG, Coffey JC, Power L, O'Connell NH, Dunne CP.

J Hosp Infect. 2016 Dec;94(4):351-357. doi: 10.1016/j.jhin.2016.08.005. Epub 2016 Aug 19.


The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.

Iwafuchi-Doi M, Donahue G, Kakumanu A, Watts JA, Mahony S, Pugh BF, Lee D, Kaestner KH, Zaret KS.

Mol Cell. 2016 Apr 7;62(1):79-91. doi: 10.1016/j.molcel.2016.03.001.


Reprogrammed Stomach Tissue as a Renewable Source of Functional β Cells for Blood Glucose Regulation.

Ariyachet C, Tovaglieri A, Xiang G, Lu J, Shah MS, Richmond CA, Verbeke C, Melton DA, Stanger BZ, Mooney D, Shivdasani RA, Mahony S, Xia Q, Breault DT, Zhou Q.

Cell Stem Cell. 2016 Mar 3;18(3):410-21. doi: 10.1016/j.stem.2016.01.003. Epub 2016 Feb 18.


Frankixalus, a New Rhacophorid Genus of Tree Hole Breeding Frogs with Oophagous Tadpoles.

Biju SD, Senevirathne G, Garg S, Mahony S, Kamei RG, Thomas A, Shouche Y, Raxworthy CJ, Meegaskumbura M, Van Bocxlaer I.

PLoS One. 2016 Jan 20;11(1):e0145727. doi: 10.1371/journal.pone.0145727. eCollection 2016.



Verma SS, Frase AT, Verma A, Pendergrass SA, Mahony S, Haas DW, Ritchie MD.

Pac Symp Biocomput. 2016;21:57-68.


Genome-Wide Organization of GATA1 and TAL1 Determined at High Resolution.

Han GC, Vinayachandran V, Bataille AR, Park B, Chan-Salis KY, Keller CA, Long M, Mahony S, Hardison RC, Pugh BF.

Mol Cell Biol. 2015 Oct 26;36(1):157-72. doi: 10.1128/MCB.00806-15. Print 2016 Jan 1.


Protein-DNA binding in high-resolution.

Mahony S, Pugh BF.

Crit Rev Biochem Mol Biol. 2015;50(4):269-83. doi: 10.3109/10409238.2015.1051505. Epub 2015 Jun 3. Review.


Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons.

Lodato S, Molyneaux BJ, Zuccaro E, Goff LA, Chen HH, Yuan W, Meleski A, Takahashi E, Mahony S, Rinn JL, Gifford DK, Arlotta P.

Nat Neurosci. 2014 Aug;17(8):1046-54. doi: 10.1038/nn.3757. Epub 2014 Jul 6.


An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding.

Mahony S, Edwards MD, Mazzoni EO, Sherwood RI, Kakumanu A, Morrison CA, Wichterle H, Gifford DK.

PLoS Comput Biol. 2014 Mar 27;10(3):e1003501. doi: 10.1371/journal.pcbi.1003501. eCollection 2014 Mar.


A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis.

Paik EJ, Mahony S, White RM, Price EN, Dibiase A, Dorjsuren B, Mosimann C, Davidson AJ, Gifford D, Zon LI.

Stem Cell Reports. 2013 Nov 7;1(5):425-36. doi: 10.1016/j.stemcr.2013.10.001. eCollection 2013.


Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals.

Mazzoni EO, Mahony S, Peljto M, Patel T, Thornton SR, McCuine S, Reeder C, Boyer LA, Young RA, Gifford DK, Wichterle H.

Nat Neurosci. 2013 Sep;16(9):1191-1198. doi: 10.1038/nn.3490. Epub 2013 Aug 18.


Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity.

Mazzoni EO, Mahony S, Closser M, Morrison CA, Nedelec S, Williams DJ, An D, Gifford DK, Wichterle H.

Nat Neurosci. 2013 Sep;16(9):1219-27. doi: 10.1038/nn.3467. Epub 2013 Jul 21.

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