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Effects of the Dietary Protein and Carbohydrate Ratio on Gut Microbiomes in Dogs of Different Body Conditions.

Li Q, Lauber CL, Czarnecki-Maulden G, Pan Y, Hannah SS.

MBio. 2017 Jan 24;8(1). pii: e01703-16. doi: 10.1128/mBio.01703-16.


High fat diet drives obesity regardless the composition of gut microbiota in mice.

Rabot S, Membrez M, Blancher F, Berger B, Moine D, Krause L, Bibiloni R, Bruneau A, Gérard P, Siddharth J, Lauber CL, Chou CJ.

Sci Rep. 2016 Aug 31;6:32484. doi: 10.1038/srep32484.


Resolving microbial membership using Abundance and Variability In Taxonomy ('AVIT ).

Chakrabarti A, Siddharth J, Lauber CL, Membrez M, Betrisey B, Loyer C, Chou CJ, Pataky Z, Golay A, Parkinson SJ.

Sci Rep. 2016 Aug 17;6:31655. doi: 10.1038/srep31655.


HLA-B27 and human β2-microglobulin affect the gut microbiota of transgenic rats.

Lin P, Bach M, Asquith M, Lee AY, Akileswaran L, Stauffer P, Davin S, Pan Y, Cambronne ED, Dorris M, Debelius JW, Lauber CL, Ackermann G, Baeza YV, Gill T, Knight R, Colbert RA, Taurog JD, Van Gelder RN, Rosenbaum JT.

PLoS One. 2014 Aug 20;9(8):e105684. doi: 10.1371/journal.pone.0105684. eCollection 2014.


Individual diet has sex-dependent effects on vertebrate gut microbiota.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R.

Nat Commun. 2014 Jul 29;5:4500. doi: 10.1038/ncomms5500.


Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity.

Parfrey LW, Walters WA, Lauber CL, Clemente JC, Berg-Lyons D, Teiling C, Kodira C, Mohiuddin M, Brunelle J, Driscoll M, Fierer N, Gilbert JA, Knight R.

Front Microbiol. 2014 Jun 19;5:298. doi: 10.3389/fmicb.2014.00298. eCollection 2014.


Vertebrate decomposition is accelerated by soil microbes.

Lauber CL, Metcalf JL, Keepers K, Ackermann G, Carter DO, Knight R.

Appl Environ Microbiol. 2014 Aug;80(16):4920-9. doi: 10.1128/AEM.00957-14. Epub 2014 Jun 6.


Bacterial phylogeny structures soil resistomes across habitats.

Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G.

Nature. 2014 May 29;509(7502):612-6. doi: 10.1038/nature13377. Epub 2014 May 21.


Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Knight R, Caporaso JG, Svanbäck R.

Ecol Lett. 2014 Aug;17(8):979-87. doi: 10.1111/ele.12301. Epub 2014 May 22.


A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system.

Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, Knight R.

Elife. 2013 Oct 15;2:e01104. doi: 10.7554/eLife.01104.


Cell size distributions of soil bacterial and archaeal taxa.

Portillo MC, Leff JW, Lauber CL, Fierer N.

Appl Environ Microbiol. 2013 Dec;79(24):7610-7. doi: 10.1128/AEM.02710-13. Epub 2013 Sep 27.


Temporal variability in soil microbial communities across land-use types.

Lauber CL, Ramirez KS, Aanderud Z, Lennon J, Fierer N.

ISME J. 2013 Aug;7(8):1641-50. doi: 10.1038/ismej.2013.50. Epub 2013 Apr 4.


Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

Fierer N, Leff JW, Adams BJ, Nielsen UN, Bates ST, Lauber CL, Owens S, Gilbert JA, Wall DH, Caporaso JG.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21390-5. doi: 10.1073/pnas.1215210110. Epub 2012 Dec 10.


Diversity, distribution and sources of bacteria in residential kitchens.

Flores GE, Bates ST, Caporaso JG, Lauber CL, Leff JW, Knight R, Fierer N.

Environ Microbiol. 2013 Feb;15(2):588-96. doi: 10.1111/1462-2920.12036. Epub 2012 Nov 22.


Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.

Lin X, McKinley J, Resch CT, Kaluzny R, Lauber CL, Fredrickson J, Knight R, Konopka A.

ISME J. 2012 Sep;6(9):1665-76. doi: 10.1038/ismej.2012.26. Epub 2012 Mar 29.


Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Huntley J, Fierer N, Owens SM, Betley J, Fraser L, Bauer M, Gormley N, Gilbert JA, Smith G, Knight R.

ISME J. 2012 Aug;6(8):1621-4. doi: 10.1038/ismej.2012.8. Epub 2012 Mar 8.


The under-recognized dominance of Verrucomicrobia in soil bacterial communities.

Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, Knight R, Fierer N.

Soil Biol Biochem. 2011 Jul;43(7):1450-1455.


Composition of human skin microbiota affects attractiveness to malaria mosquitoes.

Verhulst NO, Qiu YT, Beijleveld H, Maliepaard C, Knights D, Schulz S, Berg-Lyons D, Lauber CL, Verduijn W, Haasnoot GW, Mumm R, Bouwmeester HJ, Claas FH, Dicke M, van Loon JJ, Takken W, Knight R, Smallegange RC.

PLoS One. 2011;6(12):e28991. doi: 10.1371/journal.pone.0028991. Epub 2011 Dec 28.


Experimental and analytical tools for studying the human microbiome.

Kuczynski J, Lauber CL, Walters WA, Parfrey LW, Clemente JC, Gevers D, Knight R.

Nat Rev Genet. 2011 Dec 16;13(1):47-58. doi: 10.1038/nrg3129. Review.


SitePainter: a tool for exploring biogeographical patterns.

Gonzalez A, Stombaugh J, Lauber CL, Fierer N, Knight R.

Bioinformatics. 2012 Feb 1;28(3):436-8. doi: 10.1093/bioinformatics/btr685. Epub 2011 Dec 9.

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