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Items: 1 to 20 of 218

1.

Generating high quality libraries for DIA MS with empirically corrected peptide predictions.

Searle BC, Swearingen KE, Barnes CA, Schmidt T, Gessulat S, Küster B, Wilhelm M.

Nat Commun. 2020 Mar 25;11(1):1548. doi: 10.1038/s41467-020-15346-1.

2.

A series of novel aryl-methanone derivatives as inhibitors of FMS-like tyrosine kinase 3 (FLT3) in FLT3-ITD-positive acute myeloid leukemia.

Sellmer A, Pilsl B, Beyer M, Pongratz H, Wirth L, Elz S, Dove S, Henninger SJ, Spiekermann K, Polzer H, Klaeger S, Kuster B, Böhmer FD, Fiebig HH, Krämer OH, Mahboobi S.

Eur J Med Chem. 2020 Mar 13;193:112232. doi: 10.1016/j.ejmech.2020.112232. [Epub ahead of print]

PMID:
32199135
3.

Mass-spectrometry-based draft of the Arabidopsis proteome.

Mergner J, Frejno M, List M, Papacek M, Chen X, Chaudhary A, Samaras P, Richter S, Shikata H, Messerer M, Lang D, Altmann S, Cyprys P, Zolg DP, Mathieson T, Bantscheff M, Hazarika RR, Schmidt T, Dawid C, Dunkel A, Hofmann T, Sprunck S, Falter-Braun P, Johannes F, Mayer KFX, Jürgens G, Wilhelm M, Baumbach J, Grill E, Schneitz K, Schwechheimer C, Kuster B.

Nature. 2020 Mar;579(7799):409-414. doi: 10.1038/s41586-020-2094-2. Epub 2020 Mar 11.

PMID:
32188942
4.

Identification of molecular targets for the targeted treatment of gastric cancer using dasatinib.

Montenegro RC, Howarth A, Ceroni A, Fedele V, Farran B, Mesquita FP, Frejno M, Berger BT, Heinzlmeir S, Sailem HZ, Tesch R, Ebner D, Knapp S, Burbano R, Kuster B, Müller S.

Oncotarget. 2020 Feb 4;11(5):535-549. doi: 10.18632/oncotarget.27462. eCollection 2020 Feb 4.

5.

Proteomic and Metabolite Profiling Reveals Profound Structural and Metabolic Reorganization of Adipocyte Mitochondria in Obesity.

Schöttl T, Pachl F, Giesbertz P, Daniel H, Kuster B, Fromme T, Klingenspor M.

Obesity (Silver Spring). 2020 Mar;28(3):590-600. doi: 10.1002/oby.22737. Epub 2020 Feb 7.

PMID:
32034895
6.

Localized Inhibition of Protein Phosphatase 1 by NUAK1 Promotes Spliceosome Activity and Reveals a MYC-Sensitive Feedback Control of Transcription.

Cossa G, Roeschert I, Prinz F, Baluapuri A, Silveira Vidal R, Schülein-Völk C, Chang YC, Ade CP, Mastrobuoni G, Girard C, Wortmann L, Walz S, Lührmann R, Kempa S, Kuster B, Wolf E, Mumberg D, Eilers M.

Mol Cell. 2020 Mar 19;77(6):1322-1339.e11. doi: 10.1016/j.molcel.2020.01.008. Epub 2020 Jan 31.

7.

Combined proteomics/miRNomics of dendritic cell immunotherapy-treated glioblastoma patients as a screening for survival-associated factors.

Erhart F, Hackl M, Hahne H, Buchroithner J, Meng C, Klingenbrunner S, Reitermaier R, Fischhuber K, Skalicky S, Berger W, Spiegl-Kreinecker S, Lötsch D, Ricken G, Kuster B, Wöhrer A, Widhalm G, Hainfellner J, Felzmann T, Dohnal AM, Marosi C, Visus C.

NPJ Vaccines. 2020 Jan 16;5:5. doi: 10.1038/s41541-019-0149-x. eCollection 2020.

8.

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS.

Bian Y, Zheng R, Bayer FP, Wong C, Chang YC, Meng C, Zolg DP, Reinecke M, Zecha J, Wiechmann S, Heinzlmeir S, Scherr J, Hemmer B, Baynham M, Gingras AC, Boychenko O, Kuster B.

Nat Commun. 2020 Jan 9;11(1):157. doi: 10.1038/s41467-019-13973-x.

9.

Repurposing human kinase inhibitors to create an antibiotic active against drug-resistant Staphylococcus aureus, persisters and biofilms.

Le P, Kunold E, Macsics R, Rox K, Jennings MC, Ugur I, Reinecke M, Chaves-Moreno D, Hackl MW, Fetzer C, Mandl FAM, Lehmann J, Korotkov VS, Hacker SM, Kuster B, Antes I, Pieper DH, Rohde M, Wuest WM, Medina E, Sieber SA.

Nat Chem. 2020 Feb;12(2):145-158. doi: 10.1038/s41557-019-0378-7. Epub 2019 Dec 16.

PMID:
31844194
10.

High Heterogeneity of Multidrug-Resistant Enterobacteriaceae Fecal Levels in Hospitalized Patients Is Partially Driven by Intravenous β-Lactams.

Djukovic A, González-Barberá EM, Sanz J, Artacho A, Peñaranda I, Herrera B, Garzón MJ, Salavert M, López-Hontangas JL, Xavier KB, Kuster B, Debrauwer L, Rolain JM, Sanz MA, Xavier JB, Ubeda C.

Antimicrob Agents Chemother. 2020 Jan 27;64(2). pii: e01415-19. doi: 10.1128/AAC.01415-19. Print 2020 Jan 27.

PMID:
31767720
11.

ProteomicsDB: a multi-omics and multi-organism resource for life science research.

Samaras P, Schmidt T, Frejno M, Gessulat S, Reinecke M, Jarzab A, Zecha J, Mergner J, Giansanti P, Ehrlich HC, Aiche S, Rank J, Kienegger H, Krcmar H, Kuster B, Wilhelm M.

Nucleic Acids Res. 2020 Jan 8;48(D1):D1153-D1163. doi: 10.1093/nar/gkz974.

PMID:
31665479
12.

Cool Farm Tool Water: A global on-line tool to assess water use in crop production.

Kayatz B, Baroni G, Hillier J, Lüdtke S, Heathcote R, Malin D, van Tonder C, Kuster B, Freese D, Hüttl R, Wattenbach M.

J Clean Prod. 2019 Jan 10;207:1163-1179. doi: 10.1016/j.jclepro.2018.09.160.

13.

The Formation of a Camalexin Biosynthetic Metabolon.

Mucha S, Heinzlmeir S, Kriechbaumer V, Strickland B, Kirchhelle C, Choudhary M, Kowalski N, Eichmann R, Hückelhoven R, Grill E, Kuster B, Glawischnig E.

Plant Cell. 2019 Nov;31(11):2697-2710. doi: 10.1105/tpc.19.00403. Epub 2019 Sep 11.

14.

Proteomics Is Not an Island: Multi-omics Integration Is the Key to Understanding Biological Systems.

Zhang B, Kuster B.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S1-S4. doi: 10.1074/mcp.E119.001693. No abstract available.

15.

Rebuilding core abscisic acid signaling pathways of Arabidopsis in yeast.

Ruschhaupt M, Mergner J, Mucha S, Papacek M, Doch I, Tischer SV, Hemmler D, Chiasson D, Edel KH, Kudla J, Schmitt-Kopplin P, Kuster B, Grill E.

EMBO J. 2019 Sep 2;38(17):e101859. doi: 10.15252/embj.2019101859. Epub 2019 Aug 1.

16.

Functional expression of electrogenic sodium bicarbonate cotransporter 1 (NBCe1) in mouse cortical astrocytes is dependent on S255-257 and regulated by mTOR.

Khakipoor S, Giannaki M, Theparambil SM, Zecha J, Küster B, Heermann S, Deitmer JW, Roussa E.

Glia. 2019 Dec;67(12):2264-2278. doi: 10.1002/glia.23682. Epub 2019 Jul 18.

PMID:
31318482
17.

Interactions between Transport Protein Particle (TRAPP) complexes and Rab GTPases in Arabidopsis.

Kalde M, Elliott L, Ravikumar R, Rybak K, Altmann M, Klaeger S, Wiese C, Abele M, Al B, Kalbfuß N, Qi X, Steiner A, Meng C, Zheng H, Kuster B, Falter-Braun P, Ludwig C, Moore I, Assaad FF.

Plant J. 2019 Oct;100(2):279-297. doi: 10.1111/tpj.14442. Epub 2019 Aug 5.

PMID:
31264742
18.

MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data.

Meng C, Basunia A, Peters B, Gholami AM, Kuster B, Culhane AC.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S153-S168. doi: 10.1074/mcp.TIR118.001251. Epub 2019 Jun 26.

19.

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning.

Gessulat S, Schmidt T, Zolg DP, Samaras P, Schnatbaum K, Zerweck J, Knaute T, Rechenberger J, Delanghe B, Huhmer A, Reimer U, Ehrlich HC, Aiche S, Kuster B, Wilhelm M.

Nat Methods. 2019 Jun;16(6):509-518. doi: 10.1038/s41592-019-0426-7. Epub 2019 May 27.

PMID:
31133760
20.

PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms.

Verbruggen S, Ndah E, Van Criekinge W, Gessulat S, Kuster B, Wilhelm M, Van Damme P, Menschaert G.

Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S126-S140. doi: 10.1074/mcp.RA118.001218. Epub 2019 Apr 30.

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