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Items: 1 to 20 of 74

1.

Subject level clustering using a negative binomial model for small transcriptomic studies.

Li Q, Noel-MacDonnell JR, Koestler DC, Goode EL, Fridley BL.

BMC Bioinformatics. 2018 Dec 12;19(1):474. doi: 10.1186/s12859-018-2556-9.

2.

O-GlcNAc homeostasis contributes to cell fate decisions during hematopoiesis.

Zhang Z, Parker MP, Graw S, Novikova LV, Fedosyuk H, Fontes JD, Koestler DC, Peterson KR, Slawson C.

J Biol Chem. 2018 Dec 6. pii: jbc.RA118.005993. doi: 10.1074/jbc.RA118.005993. [Epub ahead of print]

3.

A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials.

Mudaranthakam DP, Thompson J, Hu J, Pei D, Chintala SR, Park M, Fridley BL, Gajewski B, Koestler DC, Mayo MS.

JAMIA Open. 2018 Oct;1(2):166-171. doi: 10.1093/jamiaopen/ooy023. Epub 2018 Jul 10.

4.

The Microbiomes of Pancreatic and Duodenum Tissue Overlap and Are Highly Subject Specific but Differ between Pancreatic Cancer and Noncancer Subjects.

Del Castillo E, Meier R, Chung M, Koestler DC, Chen T, Paster BJ, Charpentier KP, Kelsey KT, Izard J, Michaud DS.

Cancer Epidemiol Biomarkers Prev. 2019 Feb;28(2):370-383. doi: 10.1158/1055-9965.EPI-18-0542. Epub 2018 Oct 29.

PMID:
30373903
5.

Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array.

Zaimi I, Pei D, Koestler DC, Marsit CJ, De Vivo I, Tworoger SS, Shields AE, Kelsey KT, Michaud DS.

Epigenetics. 2018;13(10-11):1056-1071. doi: 10.1080/15592294.2018.1530008. Epub 2018 Oct 21.

PMID:
30270718
6.

Methylation-derived Neutrophil-to-Lymphocyte Ratio and Lung Cancer Risk in Heavy Smokers.

Grieshober L, Graw S, Barnett MJ, Thornquist MD, Goodman GE, Chen C, Koestler DC, Marsit CJ, Doherty JA.

Cancer Prev Res (Phila). 2018 Nov;11(11):727-734. doi: 10.1158/1940-6207.CAPR-18-0111. Epub 2018 Sep 25.

PMID:
30254071
7.

DNA methylation derived systemic inflammation indices are associated with head and neck cancer development and survival.

Ambatipudi S, Langdon R, Richmond RC, Suderman M, Koestler DC, Kelsey KT, Kazmi N, Penfold C, Ho KM, McArdle W, Ring SM, Pring M, Waterboer T, Pawlita M, Gaunt TR, Davey Smith G, Thomas S, Ness AR, Relton CL.

Oral Oncol. 2018 Oct;85:87-94. doi: 10.1016/j.oraloncology.2018.08.021. Epub 2018 Sep 5.

8.

Tracing human stem cell lineage during development using DNA methylation.

Salas LA, Wiencke JK, Koestler DC, Zhang Z, Christensen BC, Kelsey KT.

Genome Res. 2018 Sep;28(9):1285-1295. doi: 10.1101/gr.233213.117. Epub 2018 Aug 2.

9.

Licofelone Enhances the Efficacy of Paclitaxel in Ovarian Cancer by Reversing Drug Resistance and Tumor Stem-like Properties.

Hirst J, Pathak HB, Hyter S, Pessetto ZY, Ly T, Graw S, Koestler DC, Krieg AJ, Roby KF, Godwin AK.

Cancer Res. 2018 Aug 1;78(15):4370-4385. doi: 10.1158/0008-5472.CAN-17-3993. Epub 2018 Jun 11.

PMID:
29891506
10.

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.

Salas LA, Koestler DC, Butler RA, Hansen HM, Wiencke JK, Kelsey KT, Christensen BC.

Genome Biol. 2018 May 29;19(1):64. doi: 10.1186/s13059-018-1448-7.

11.

Association of Neutrophil-to-Lymphocyte Ratio With Mortality and Cardiovascular Disease in the Jackson Heart Study and Modification by the Duffy Antigen Variant.

Kim S, Eliot M, Koestler DC, Wu WC, Kelsey KT.

JAMA Cardiol. 2018 Jun 1;3(6):455-462. doi: 10.1001/jamacardio.2018.1042.

PMID:
29801037
12.

Developing a genetic signature to predict drug response in ovarian cancer.

Hyter S, Hirst J, Pathak H, Pessetto ZY, Koestler DC, Raghavan R, Pei D, Godwin AK.

Oncotarget. 2017 Dec 26;9(19):14828-14848. doi: 10.18632/oncotarget.23663. eCollection 2018 Mar 13.

13.

Mediation analysis of alcohol consumption, DNA methylation, and epithelial ovarian cancer.

Wu D, Yang H, Winham SJ, Natanzon Y, Koestler DC, Luo T, Fridley BL, Goode EL, Zhang Y, Cui Y.

J Hum Genet. 2018 Mar;63(3):339-348. doi: 10.1038/s10038-017-0385-8. Epub 2018 Jan 10.

14.

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer.

Seyednasrollah F, Koestler DC, Wang T, Piccolo SR, Vega R, Greiner R, Fuchs C, Gofer E, Kumar L, Wolfinger RD, Kanigel Winner K, Bare C, Neto EC, Yu T, Shen L, Abdallah K, Norman T, Stolovitzky G, Soule HR, Sweeney CJ, Ryan CJ, Scher HI, Sartor O, Elo LL, Zhou FL, Guinney J, Costello JC; Prostate Cancer DREAM Challenge Community.

JCO Clin Cancer Inform. 2017 Nov;1:1-15. doi: 10.1200/CCI.17.00018.

15.

Mitochondrial Haplotype Alters Mammary Cancer Tumorigenicity and Metastasis in an Oncogenic Driver-Dependent Manner.

Brinker AE, Vivian CJ, Koestler DC, Tsue TT, Jensen RA, Welch DR.

Cancer Res. 2017 Dec 15;77(24):6941-6949. doi: 10.1158/0008-5472.CAN-17-2194. Epub 2017 Oct 25.

16.

Sustained O-GlcNAcylation reprograms mitochondrial function to regulate energy metabolism.

Tan EP, McGreal SR, Graw S, Tessman R, Koppel SJ, Dhakal P, Zhang Z, Machacek M, Zachara NE, Koestler DC, Peterson KR, Thyfault JP, Swerdlow RH, Krishnamurthy P, DiTacchio L, Apte U, Slawson C.

J Biol Chem. 2017 Sep 8;292(36):14940-14962. doi: 10.1074/jbc.M117.797944. Epub 2017 Jul 24.

17.

Mitochondrial Genomic Backgrounds Affect Nuclear DNA Methylation and Gene Expression.

Vivian CJ, Brinker AE, Graw S, Koestler DC, Legendre C, Gooden GC, Salhia B, Welch DR.

Cancer Res. 2017 Nov 15;77(22):6202-6214. doi: 10.1158/0008-5472.CAN-17-1473. Epub 2017 Jun 29.

18.

Maternal serum PFOA concentration and DNA methylation in cord blood: A pilot study.

Kingsley SL, Kelsey KT, Butler R, Chen A, Eliot MN, Romano ME, Houseman A, Koestler DC, Lanphear BP, Yolton K, Braun JM.

Environ Res. 2017 Oct;158:174-178. doi: 10.1016/j.envres.2017.06.013. Epub 2017 Jun 20.

19.

The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression.

Winterbottom EF, Koestler DC, Fei DL, Wika E, Capobianco AJ, Marsit CJ, Karagas MR, Robbins DJ.

Environ Health. 2017 Jun 14;16(1):59. doi: 10.1186/s12940-017-0267-8.

20.

Integrative epigenetic and genetic pan-cancer somatic alteration portraits.

Salas LA, Johnson KC, Koestler DC, O'Sullivan DE, Christensen BC.

Epigenetics. 2017 Jul 3;12(7):561-574. doi: 10.1080/15592294.2017.1319043. Epub 2017 Apr 20.

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