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West Nile virus infection and interferon alpha treatment alter the spectrum and the levels of coding and noncoding host RNAs secreted in extracellular vesicles.

Slonchak A, Clarke B, Mackenzie J, Amarilla AA, Setoh YX, Khromykh AA.

BMC Genomics. 2019 Jun 10;20(1):474. doi: 10.1186/s12864-019-5835-6.


Author Correction: Infectious DNAs derived from insect-specific flavivirus genomes enable identification of pre- and post-entry host restrictions in vertebrate cells.

Piyasena TBH, Setoh YX, Hobson-Peters J, Newton ND, Bielefeldt-Ohmann H, McLean BJ, Vet LJ, Khromykh AA, Hall RA.

Sci Rep. 2019 Jun 5;9(1):8431. doi: 10.1038/s41598-019-44657-7.


Determinants of Zika virus host tropism uncovered by deep mutational scanning.

Setoh YX, Amarilla AA, Peng NYG, Griffiths RE, Carrera J, Freney ME, Nakayama E, Ogawa S, Watterson D, Modhiran N, Nanyonga FE, Torres FJ, Slonchak A, Periasamy P, Prow NA, Tang B, Harrison J, Hobson-Peters J, Cuddihy T, Cooper-White J, Hall RA, Young PR, Mackenzie JM, Wolvetang E, Bloom JD, Suhrbier A, Khromykh AA.

Nat Microbiol. 2019 May;4(5):876-887. doi: 10.1038/s41564-019-0399-4. Epub 2019 Mar 18.


CCR2 Plays a Protective Role in Rocio Virus-Induced Encephalitis by Promoting Macrophage Infiltration Into the Brain.

Amarilla AA, Santos-Junior NN, Figueiredo ML, Luiz JPM, Fumagalli MJ, Colón DF, Lippi V, Alfonso HL, Lima-Junior DS, Trabuco AC, Spinieli RL, Desidera AC, Leite-Panissi CRA, Lauretti F, Mendoza SES, Silva CLA, Rego EM, Galvao-Lima LJ, Bassi GS, Penharvel Martíns SLB, Manrique WG, Alves-Filho JC, Cunha FQ, Peng NYG, Modhiran N, Setoh YX, Khromykh AA, Figueiredo LTM, Aquino VH.

J Infect Dis. 2019 May 24;219(12):2015-2025. doi: 10.1093/infdis/jiz029.


Contemporary Anti-Ebola Drug Discovery Approaches and Platforms.

Schneider-Futschik EK, Hoyer D, Khromykh AA, Baell JB, Marsh GA, Baker MA, Li J, Velkov T.

ACS Infect Dis. 2019 Jan 11;5(1):35-48. doi: 10.1021/acsinfecdis.8b00285. Epub 2018 Dec 20.


Fetal Brain Infection Is Not a Unique Characteristic of Brazilian Zika Viruses.

Setoh YX, Peng NY, Nakayama E, Amarilla AA, Prow NA, Suhrbier A, Khromykh AA.

Viruses. 2018 Oct 3;10(10). pii: E541. doi: 10.3390/v10100541.


Subgenomic flaviviral RNAs: What do we know after the first decade of research.

Slonchak A, Khromykh AA.

Antiviral Res. 2018 Nov;159:13-25. doi: 10.1016/j.antiviral.2018.09.006. Epub 2018 Sep 11. Review.


Ilheus and Saint Louis encephalitis viruses elicit cross-protection against a lethal Rocio virus challenge in mice.

Amarilla AA, Fumagalli MJ, Figueiredo ML, Lima-Junior DS, Santos-Junior NN, Alfonso HL, Lippi V, Trabuco AC, Lauretti F, Muller VD, Colón DF, Luiz JPM, Suhrbier A, Setoh YX, Khromykh AA, Figueiredo LTM, Aquino VH.

PLoS One. 2018 Jun 13;13(6):e0199071. doi: 10.1371/journal.pone.0199071. eCollection 2018.


A vaccinia-based single vector construct multi-pathogen vaccine protects against both Zika and chikungunya viruses.

Prow NA, Liu L, Nakayama E, Cooper TH, Yan K, Eldi P, Hazlewood JE, Tang B, Le TT, Setoh YX, Khromykh AA, Hobson-Peters J, Diener KR, Howley PM, Hayball JD, Suhrbier A.

Nat Commun. 2018 Mar 26;9(1):1230. doi: 10.1038/s41467-018-03662-6.


Helicase Domain of West Nile Virus NS3 Protein Plays a Role in Inhibition of Type I Interferon Signalling.

Setoh YX, Periasamy P, Peng NYG, Amarilla AA, Slonchak A, Khromykh AA.

Viruses. 2017 Nov 2;9(11). pii: E326. doi: 10.3390/v9110326.


Characterization of Recombinant Flaviviridae Viruses Possessing a Small Reporter Tag.

Tamura T, Fukuhara T, Uchida T, Ono C, Mori H, Sato A, Fauzyah Y, Okamoto T, Kurosu T, Setoh YX, Imamura M, Tautz N, Sakoda Y, Khromykh AA, Chayama K, Matsuura Y.

J Virol. 2018 Jan 2;92(2). pii: e01582-17. doi: 10.1128/JVI.01582-17. Print 2018 Jan 15.


Differential Diagnosis of Flavivirus Infections in Horses Using Viral Envelope Protein Domain III Antigens in Enzyme-Linked Immunosorbent Assay.

Piyasena TBH, Setoh YX, Hobson-Peters J, Prow NA, Bielefeldt-Ohmann H, Khromykh AA, Perera D, Cardosa MJ, Kirkland PD, Hall RA.

Vector Borne Zoonotic Dis. 2017 Dec;17(12):825-835. doi: 10.1089/vbz.2017.2172. Epub 2017 Oct 30.


Full genome sequence of Rocio virus reveal substantial variations from the prototype Rocio virus SPH 34675 sequence.

Setoh YX, Amarilla AA, Peng NY, Slonchak A, Periasamy P, Figueiredo LTM, Aquino VH, Khromykh AA.

Arch Virol. 2018 Jan;163(1):255-258. doi: 10.1007/s00705-017-3561-4. Epub 2017 Sep 22.


Cell fusing agent virus and dengue virus mutually interact in Aedes aegypti cell lines.

Zhang G, Asad S, Khromykh AA, Asgari S.

Sci Rep. 2017 Jul 31;7(1):6935. doi: 10.1038/s41598-017-07279-5.


Infectious DNAs derived from insect-specific flavivirus genomes enable identification of pre- and post-entry host restrictions in vertebrate cells.

Piyasena TBH, Setoh YX, Hobson-Peters J, Newton ND, Bielefeldt-Ohmann H, McLean BJ, Vet LJ, Khromykh AA, Hall RA.

Sci Rep. 2017 Jun 7;7(1):2940. doi: 10.1038/s41598-017-03120-1. Erratum in: Sci Rep. 2019 Jun 5;9(1):8431.


De Novo Generation and Characterization of New Zika Virus Isolate Using Sequence Data from a Microcephaly Case.

Setoh YX, Prow NA, Peng N, Hugo LE, Devine G, Hazlewood JE, Suhrbier A, Khromykh AA.

mSphere. 2017 May 17;2(3). pii: e00190-17. doi: 10.1128/mSphereDirect.00190-17. eCollection 2017 May-Jun.


Chimeric viruses between Rocio and West Nile: the role for Rocio prM-E proteins in virulence and inhibition of interferon-α/β signaling.

Amarilla AA, Setoh YX, Periasamy P, Peng NY, Pali G, Figueiredo LT, Khromykh AA, Aquino VH.

Sci Rep. 2017 Mar 20;7:44642. doi: 10.1038/srep44642.


Genetic characterization of Cacipacoré virus from ticks collected in São Paulo State, Brazil.

de Figueiredo GG, Amarilla AA, de Souza WM, Fumagalli MJ, de Figueiredo MLG, Szabó MPJ, Badra SJ, Setoh YX, Khromykh AA, Aquino VH, Figueiredo LTM.

Arch Virol. 2017 Jun;162(6):1783-1786. doi: 10.1007/s00705-017-3279-3. Epub 2017 Feb 20.


Successful post-exposure prophylaxis of Ebola infected non-human primates using Ebola glycoprotein-specific equine IgG.

Pyankov OV, Setoh YX, Bodnev SA, Edmonds JH, Pyankova OG, Pyankov SA, Pali G, Belford S, Lu L, La M, Lovrecz G, Volchkova VA, Chappell KJ, Watterson D, Marsh G, Young PR, Agafonov AA, Farmer JF, Volchkov VE, Suhrbier A, Khromykh AA.

Sci Rep. 2017 Feb 3;7:41537. doi: 10.1038/srep41537.


Virulence and Evolution of West Nile Virus, Australia, 1960-2012.

Prow NA, Edmonds JH, Williams DT, Setoh YX, Bielefeldt-Ohmann H, Suen WW, Hobson-Peters J, van den Hurk AF, Pyke AT, Hall-Mendelin S, Northill JA, Johansen CA, Warrilow D, Wang J, Kirkland PD, Doggett S, Andrade CC, Brault AC, Khromykh AA, Hall RA.

Emerg Infect Dis. 2016 Aug;22(8):1353-62. doi: 10.3201/eid2208.151719.

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