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Items: 1 to 20 of 55

1.

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat.

Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT.

Nat Ecol Evol. 2018 Apr;2(4):659-668. doi: 10.1038/s41559-018-0476-8. Epub 2018 Feb 19.

PMID:
29459707
2.

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine.

Vasylyeva TI, Liulchuk M, Friedman SR, Sazonova I, Faria NR, Katzourakis A, Babii N, Scherbinska A, Thézé J, Pybus OG, Smyrnov P, Mbisa JL, Paraskevis D, Hatzakis A, Magiorkinis G.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1051-1056. doi: 10.1073/pnas.1701447115. Epub 2018 Jan 16.

PMID:
29339468
3.

Roles of Endogenous Retroviruses in Early Life Events.

Magiorkinis G, Katzourakis A, Lagiou P.

Trends Microbiol. 2017 Nov;25(11):876-877. doi: 10.1016/j.tim.2017.09.002. Epub 2017 Sep 29.

PMID:
28969881
4.

STEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data.

Santander CG, Gambron P, Marchi E, Karamitros T, Katzourakis A, Magiorkinis G.

Virus Evol. 2017 Aug 21;3(2):vex023. doi: 10.1093/ve/vex023. eCollection 2017 Jul.

5.

Editorial overview: Paleovirology: the genomic fossil record, and consequences of ancient viral infections.

Katzourakis A.

Curr Opin Virol. 2017 Aug;25:ix-xi. doi: 10.1016/j.coviro.2017.08.002. Epub 2017 Sep 1. No abstract available.

PMID:
28867332
6.

Disentangling the origins of virophages and polintons.

Campbell S, Aswad A, Katzourakis A.

Curr Opin Virol. 2017 Aug;25:59-65. doi: 10.1016/j.coviro.2017.07.011. Epub 2017 Aug 9. Review.

PMID:
28802203
7.

A novel viral lineage distantly related to herpesviruses discovered within fish genome sequence data.

Aswad A, Katzourakis A.

Virus Evol. 2017 Aug 4;3(2):vex016. doi: 10.1093/ve/vex016. eCollection 2017 Jul.

8.

Marine origin of retroviruses in the early Palaeozoic Era.

Aiewsakun P, Katzourakis A.

Nat Commun. 2017 Jan 10;8:13954. doi: 10.1038/ncomms13954.

9.

Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects.

Vasylyeva TI, Friedman SR, Lourenco J, Gupta S, Hatzakis A, Pybus OG, Katzourakis A, Smyrnov P, Karamitros T, Paraskevis D, Magiorkinis G.

AIDS. 2016 Nov 28;30(18):2885-2890.

10.

A contaminant-free assessment of Endogenous Retroviral RNA in human plasma.

Karamitros T, Paraskevis D, Hatzakis A, Psichogiou M, Elefsiniotis I, Hurst T, Geretti AM, Beloukas A, Frater J, Klenerman P, Katzourakis A, Magiorkinis G.

Sci Rep. 2016 Sep 19;6:33598. doi: 10.1038/srep33598.

11.

De Novo Assembly of Human Herpes Virus Type 1 (HHV-1) Genome, Mining of Non-Canonical Structures and Detection of Novel Drug-Resistance Mutations Using Short- and Long-Read Next Generation Sequencing Technologies.

Karamitros T, Harrison I, Piorkowska R, Katzourakis A, Magiorkinis G, Mbisa JL.

PLoS One. 2016 Jun 16;11(6):e0157600. doi: 10.1371/journal.pone.0157600. eCollection 2016.

12.

Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved.

Gemmell P, Hein J, Katzourakis A.

PLoS Comput Biol. 2016 Jun 13;12(6):e1004964. doi: 10.1371/journal.pcbi.1004964. eCollection 2016 Jun.

13.

The global spread of HIV-1 subtype B epidemic.

Magiorkinis G, Angelis K, Mamais I, Katzourakis A, Hatzakis A, Albert J, Lawyer G, Hamouda O, Struck D, Vercauteren J, Wensing A, Alexiev I, Åsjö B, Balotta C, Gomes P, Camacho RJ, Coughlan S, Griskevicius A, Grossman Z, Horban A, Kostrikis LG, Lepej SJ, Liitsola K, Linka M, Nielsen C, Otelea D, Paredes R, Poljak M, Puchhammer-Stöckl E, Schmit JC, Sönnerborg A, Staneková D, Stanojevic M, Stylianou DC, Boucher CAB; SPREAD program, Nikolopoulos G, Vasylyeva T, Friedman SR, van de Vijver D, Angarano G, Chaix ML, de Luca A, Korn K, Loveday C, Soriano V, Yerly S, Zazzi M, Vandamme AM, Paraskevis D.

Infect Genet Evol. 2016 Dec;46:169-179. doi: 10.1016/j.meegid.2016.05.041. Epub 2016 Jun 2.

14.

Time-Dependent Rate Phenomenon in Viruses.

Aiewsakun P, Katzourakis A.

J Virol. 2016 Jul 27;90(16):7184-95. doi: 10.1128/JVI.00593-16. Print 2016 Aug 15.

15.

Evolution: Endogenous Viruses Provide Shortcuts in Antiviral Immunity.

Katzourakis A, Aswad A.

Curr Biol. 2016 May 23;26(10):R427-9. doi: 10.1016/j.cub.2016.03.072.

16.

Human endogenous retrovirus (HERV) expression is not induced by treatment with the histone deacetylase (HDAC) inhibitors in cellular models of HIV-1 latency.

Hurst T, Pace M, Katzourakis A, Phillips R, Klenerman P, Frater J, Magiorkinis G.

Retrovirology. 2016 Feb 6;13:10. doi: 10.1186/s12977-016-0242-4.

17.

Wide distribution and ancient evolutionary history of simian foamy viruses in New World primates.

Ghersi BM, Jia H, Aiewsakun P, Katzourakis A, Mendoza P, Bausch DG, Kasper MR, Montgomery JM, Switzer WM.

Retrovirology. 2015 Oct 29;12:89. doi: 10.1186/s12977-015-0214-0.

18.

Convergent capture of retroviral superantigens by mammalian herpesviruses.

Aswad A, Katzourakis A.

Nat Commun. 2015 Sep 24;6:8299. doi: 10.1038/ncomms9299.

19.

Endogenous retroviruses.

Hayward A, Katzourakis A.

Curr Biol. 2015 Aug 3;25(15):R644-6. doi: 10.1016/j.cub.2015.05.041.

20.

Time dependency of foamy virus evolutionary rate estimates.

Aiewsakun P, Katzourakis A.

BMC Evol Biol. 2015 Jun 26;15:119. doi: 10.1186/s12862-015-0408-z.

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