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Items: 1 to 20 of 311

1.

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools.

Friedrichs M, Shoshi A, Chmura PJ, Ison J, Schwämmle V, Schreiber F, Hofestädt R, Sommer B.

J Integr Bioinform. 2020 Jan 8;16(4). pii: /j/jib.2019.16.issue-4/jib-2019-0059/jib-2019-0059.xml. doi: 10.1515/jib-2019-0059.

2.

Predicting and Designing Epitope Ensemble Vaccines against HTLV-1.

Alam S, Hasan MK, Manjur OHB, Khan AM, Sharmin Z, Pavel MA, Hossain MF.

J Integr Bioinform. 2020 Jan 8;16(4). pii: /j/jib.2019.16.issue-4/jib-2018-0051/jib-2018-0051.xml. doi: 10.1515/jib-2018-0051.

3.

Programmatic Access to FAIRified Digital Plant Genetic Resources.

Ghaffar M, Schüler D, König P, Arend D, Junker A, Scholz U, Lange M.

J Integr Bioinform. 2020 Jan 8;16(4). pii: /j/jib.2019.16.issue-4/jib-2019-0060/jib-2019-0060.xml. doi: 10.1515/jib-2019-0060.

4.

Ancestral Reconstruction and Investigations of Genomic Recombination on some Pentapetalae Chloroplasts.

Guyeux C, Salomon M, Al-Nuaimi B, AlKindy B, Couchot JF.

J Integr Bioinform. 2019 Dec 20;16(4). pii: /j/jib.2019.16.issue-4/jib-2018-0057/jib-2018-0057.xml. doi: 10.1515/jib-2018-0057.

5.

Integrative Bioinformatics: History and Future.

Chen M, Hofestädt R, Taubert J.

J Integr Bioinform. 2019 Sep 13;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-2001/jib-2019-2001.xml. doi: 10.1515/jib-2019-2001. No abstract available.

6.

The CELLmicrocosmos Tools: A Small History of Java-Based Cell and Membrane Modelling Open Source Software Development.

Sommer B.

J Integr Bioinform. 2019 Sep 27;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0057/jib-2019-0057.xml. doi: 10.1515/jib-2019-0057.

7.

A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases.

Zolotareva O, Kleine M.

J Integr Bioinform. 2019 Sep 9;16(4). pii: /j/jib.2019.16.issue-4/jib-2018-0069/jib-2018-0069.xml. doi: 10.1515/jib-2018-0069. Review.

8.

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.

Schreiber F, Sommer B, Bader GD, Gleeson P, Golebiewski M, Hucka M, Keating SM, König M, Myers C, Nickerson D, Waltemath D.

J Integr Bioinform. 2019 Jul 13;16(2). pii: /j/jib.2019.16.issue-2/jib-2019-0035/jib-2019-0035.xml. doi: 10.1515/jib-2019-0035. Review.

9.

Non-Coding RNAs and their Integrated Networks.

Zhang P, Wu W, Chen Q, Chen M.

J Integr Bioinform. 2019 Jul 13;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0027/jib-2019-0027.xml. doi: 10.1515/jib-2019-0027. Review.

10.

Is there a Function for a Sex Pheromone Precursor?

Vasieva O, Goryanin I.

J Integr Bioinform. 2019 Jul 13;16(4). pii: /j/jib.2019.16.issue-4/jib-2019-0016/jib-2019-0016.xml. doi: 10.1515/jib-2019-0016.

11.

Geno2proteo, a Tool for Batch Retrieval of DNA and Protein Sequences from Any Genomic or Protein Regions.

Li Y, Aguilar-Martinez E, Sharrocks AD.

J Integr Bioinform. 2019 Jul 13;16(3). pii: /j/jib.2019.16.issue-3/jib-2018-0090/jib-2018-0090.xml. doi: 10.1515/jib-2018-0090.

12.

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.

Hucka M, Bergmann FT, Chaouiya C, Dräger A, Hoops S, Keating SM, König M, Novère NL, Myers CJ, Olivier BG, Sahle S, Schaff JC, Sheriff R, Smith LP, Waltemath D, Wilkinson DJ, Zhang F.

J Integr Bioinform. 2019 Jun 20;16(2). pii: /j/jib.2019.16.issue-2/jib-2019-0021/jib-2019-0021.xml. doi: 10.1515/jib-2019-0021.

13.

Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.

Garkov D, Klein K, Klukas C, Schreiber F.

J Integr Bioinform. 2019 Jun 14;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0026/jib-2019-0026.xml. doi: 10.1515/jib-2019-0026.

14.

Synthetic Biology Open Language (SBOL) Version 2.3.

Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, Pocock M, Samineni M, Scott-Brown J, Tarter Y, Zhang M, Zhang Z, Zundel Z, Beal J, Bissell M, Clancy K, Gennari JH, Misirli G, Myers C, Oberortner E, Sauro H, Wipat A.

J Integr Bioinform. 2019 Jun 13;16(2). pii: /j/jib.2019.16.issue-2/jib-2019-0025/jib-2019-0025.xml. doi: 10.1515/jib-2019-0025.

15.

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

Rougny A, Touré V, Moodie S, Balaur I, Czauderna T, Borlinghaus H, Dogrusoz U, Mazein A, Dräger A, Blinov ML, Villéger A, Haw R, Demir E, Mi H, Sorokin A, Schreiber F, Luna A.

J Integr Bioinform. 2019 Jun 13;16(2). pii: /j/jib.2019.16.issue-2/jib-2019-0022/jib-2019-0022.xml. doi: 10.1515/jib-2019-0022. Review.

16.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, Nguyen T, Le Novere N, Pocock M, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2019 Jun 13;16(2). pii: /j/jib.2019.16.issue-2/jib-2018-0101/jib-2018-0101.xml. doi: 10.1515/jib-2018-0101. Review.

17.

Towards an Internet of Science.

Allmer J.

J Integr Bioinform. 2019 May 30;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0024/jib-2019-0024.xml. doi: 10.1515/jib-2019-0024.

18.

History and Future of KALIS: Towards Computer-assisted Decision Making in Prescriptive Medicine.

Friedrichs M, Shoshi A.

J Integr Bioinform. 2019 May 30;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0011/jib-2019-0011.xml. doi: 10.1515/jib-2019-0011.

19.

Integrating Molecular Biology and Bioinformatics Education.

Pucker B, Schilbert HM, Schumacher SF.

J Integr Bioinform. 2019 May 30;16(3). pii: /j/jib.2019.16.issue-3/jib-2019-0005/jib-2019-0005.xml. doi: 10.1515/jib-2019-0005.

20.

Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer.

Asati N, Mishra A, Shukla A, Singh TR.

J Integr Bioinform. 2019 May 28;16(3). pii: /j/jib.2019.16.issue-3/jib-2018-0080/jib-2018-0080.xml. doi: 10.1515/jib-2018-0080.

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