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Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data.

Coudray A, Battenhouse AM, Bucher P, Iyer VR.

PeerJ. 2018 Jul 31;6:e5362. doi: 10.7717/peerj.5362. eCollection 2018.


Identification and removal of sequencing artifacts produced by mispriming during reverse transcription in multiple RNA-seq technologies.

Shivram H, Iyer VR.

RNA. 2018 Sep;24(9):1266-1274. doi: 10.1261/rna.066217.118. Epub 2018 Jun 27.


Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells.

Hall AW, Battenhouse AM, Shivram H, Morris AR, Cowperthwaite MC, Shpak M, Iyer VR.

Cancer Res. 2018 May 15;78(10):2463-2474. doi: 10.1158/0008-5472.CAN-17-1724. Epub 2018 Mar 16.


Revisiting the "Tram-Track" sign.

Nair AG, Iyer VR, Gopinathan I.

Indian J Ophthalmol. 2017 Nov;65(11):1217-1218. doi: 10.4103/ijo.IJO_510_17. No abstract available.


Reproducible imaging features of biologically aggressive gastrointestinal stromal tumors of the small bowel.

Maldonado FJ, Sheedy SP, Iyer VR, Hansel SL, Bruining DH, McCollough CH, Harmsen WS, Barlow JM, Fletcher JG.

Abdom Radiol (NY). 2018 Jul;43(7):1567-1574. doi: 10.1007/s00261-017-1370-6.


Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.

Lee BS, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker HO, Dekker JD.

Mol Cell Biol. 2017 Dec 13;38(1). pii: e00362-17. doi: 10.1128/MCB.00362-17. Print 2018 Jan 1.


Retraction for Lee et al., "The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination".

Lee BS, Dekker JD, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker PW.

Mol Cell Biol. 2017 Oct 13;37(21). pii: e00358-17. doi: 10.1128/MCB.00358-17. Print 2017 Nov 1. No abstract available.


Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis.

Wang L, Zhang F, Rode S, Chin KK, Ko EE, Kim J, Iyer VR, Qiao H.

BMC Genomics. 2017 Jul 17;18(1):538. doi: 10.1186/s12864-017-3929-6.


Utility of coronal contrast-enhanced fat-suppressed FLAIR in the evaluation of optic neuropathy and atrophy.

Boegel KH, Tyan AE, Iyer VR, Rykken JB, McKinney AM.

Eur J Radiol Open. 2017 Feb 28;4:13-18. doi: 10.1016/j.ejro.2017.02.002. eCollection 2017.


Increased mitochondrial nanotunneling activity, induced by calcium imbalance, affects intermitochondrial matrix exchanges.

Lavorato M, Iyer VR, Dewight W, Cupo RR, Debattisti V, Gomez L, De la Fuente S, Zhao YT, Valdivia HH, Hajnóczky G, Franzini-Armstrong C.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):E849-E858. doi: 10.1073/pnas.1617788113. Epub 2017 Jan 17.


Synthetic evolutionary origin of a proofreading reverse transcriptase.

Ellefson JW, Gollihar J, Shroff R, Shivram H, Iyer VR, Ellington AD.

Science. 2016 Jun 24;352(6293):1590-3. doi: 10.1126/science.aaf5409.


Innovative cardiopulmonary resuscitation and automated external defibrillator programs in schools: Results from the Student Program for Olympic Resuscitation Training in Schools (SPORTS) study.

Vetter VL, Haley DM, Dugan NP, Iyer VR, Shults J.

Resuscitation. 2016 Jul;104:46-52. doi: 10.1016/j.resuscitation.2016.04.010. Epub 2016 Apr 27.


The Determinants of Directionality in Transcriptional Initiation.

Bagchi DN, Iyer VR.

Trends Genet. 2016 Jun;32(6):322-333. doi: 10.1016/j.tig.2016.03.005. Epub 2016 Apr 7. Review.


Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer.

Zhang D, Park D, Zhong Y, Lu Y, Rycaj K, Gong S, Chen X, Liu X, Chao HP, Whitney P, Calhoun-Davis T, Takata Y, Shen J, Iyer VR, Tang DG.

Nat Commun. 2016 Feb 29;7:10798. doi: 10.1038/ncomms10798.


Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.

Srivastava SK, Iyer VR, Ghosh T, Lambadi PR, Pathania R, Navani NK.

Nucleic Acids Res. 2016 Mar 18;44(5):2451-61. doi: 10.1093/nar/gkw029. Epub 2016 Feb 2.


Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1.

Dekker JD, Park D, Shaffer AL 3rd, Kohlhammer H, Deng W, Lee BK, Ippolito GC, Georgiou G, Iyer VR, Staudt LM, Tucker HO.

Proc Natl Acad Sci U S A. 2016 Feb 2;113(5):E577-86. doi: 10.1073/pnas.1524677113. Epub 2016 Jan 19.


Novel association of polymorphic genetic variants with predictors of outcome of catheter ablation in atrial fibrillation: new directions from a prospective study (DECAF).

Mohanty S, Hall AW, Mohanty P, Prakash S, Trivedi C, Di Biase L, Santangeli P, Bai R, Burkhardt JD, Gallinghouse GJ, Horton R, Sanchez JE, Hranitzky PM, Al-Ahmad A, Iyer VR, Natale A.

J Interv Card Electrophysiol. 2016 Jan;45(1):7-17.


MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes.

Polioudakis D, Abell NS, Iyer VR.

PLoS One. 2015 May 20;10(5):e0126535. doi: 10.1371/journal.pone.0126535. eCollection 2015.

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