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Items: 8

1.

Defining flexible vs. inherent promoter architectures: the importance of dynamics and environmental considerations.

Huebert DJ, Gasch AP.

Nucleus. 2012 Sep-Oct;3(5):399-403. doi: 10.4161/nucl.21172. Epub 2012 Jul 3.

2.

Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators.

Huebert DJ, Kuan PF, Keleş S, Gasch AP.

Mol Cell Biol. 2012 May;32(9):1645-53. doi: 10.1128/MCB.06170-11. Epub 2012 Feb 21.

3.

The conserved bromo-adjacent homology domain of yeast Orc1 functions in the selection of DNA replication origins within chromatin.

Müller P, Park S, Shor E, Huebert DJ, Warren CL, Ansari AZ, Weinreich M, Eaton ML, MacAlpine DM, Fox CA.

Genes Dev. 2010 Jul 1;24(13):1418-33. doi: 10.1101/gad.1906410.

4.

The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress.

Alejandro-Osorio AL, Huebert DJ, Porcaro DT, Sonntag ME, Nillasithanukroh S, Will JL, Gasch AP.

Genome Biol. 2009;10(5):R57. doi: 10.1186/gb-2009-10-5-r57. Epub 2009 May 26.

5.

Genome-wide analysis of histone modifications by ChIP-on-chip.

Huebert DJ, Kamal M, O'Donovan A, Bernstein BE.

Methods. 2006 Dec;40(4):365-9.

PMID:
17101450
6.

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.

Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES.

Cell. 2006 Apr 21;125(2):315-26.

7.

Genomic views of chromatin.

Huebert DJ, Bernstein BE.

Curr Opin Genet Dev. 2005 Oct;15(5):476-81. Review.

PMID:
16099159
8.

Genomic maps and comparative analysis of histone modifications in human and mouse.

Bernstein BE, Kamal M, Lindblad-Toh K, Bekiranov S, Bailey DK, Huebert DJ, McMahon S, Karlsson EK, Kulbokas EJ 3rd, Gingeras TR, Schreiber SL, Lander ES.

Cell. 2005 Jan 28;120(2):169-81.

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