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Items: 1 to 20 of 31

1.

Biology and genome of a newly discovered sibling species of Caenorhabditis elegans.

Kanzaki N, Tsai IJ, Tanaka R, Hunt VL, Liu D, Tsuyama K, Maeda Y, Namai S, Kumagai R, Tracey A, Holroyd N, Doyle SR, Woodruff GC, Murase K, Kitazume H, Chai C, Akagi A, Panda O, Ke HM, Schroeder FC, Wang J, Berriman M, Sternberg PW, Sugimoto A, Kikuchi T.

Nat Commun. 2018 Aug 10;9(1):3216. doi: 10.1038/s41467-018-05712-5.

2.

Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni.

Roquis D, Taudt A, Geyer KK, Padalino G, Hoffmann KF, Holroyd N, Berriman M, Aliaga B, Chaparro C, Grunau C, Augusto RC.

PLoS Pathog. 2018 May 21;14(5):e1007066. doi: 10.1371/journal.ppat.1007066. eCollection 2018 May.

3.

Transcriptomic profiling of nematode parasites surviving vaccine exposure.

Sallé G, Laing R, Cotton JA, Maitland K, Martinelli A, Holroyd N, Tracey A, Berriman M, Smith WD, Newlands GFJ, Hanks E, Devaney E, Britton C.

Int J Parasitol. 2018 Apr;48(5):395-402. doi: 10.1016/j.ijpara.2018.01.004. Epub 2018 Mar 10.

4.

A Genome Resequencing-Based Genetic Map Reveals the Recombination Landscape of an Outbred Parasitic Nematode in the Presence of Polyploidy and Polyandry.

Doyle SR, Laing R, Bartley DJ, Britton C, Chaudhry U, Gilleard JS, Holroyd N, Mable BK, Maitland K, Morrison AA, Tait A, Tracey A, Berriman M, Devaney E, Cotton JA, Sargison ND.

Genome Biol Evol. 2018 Feb 1;10(2):396-409. doi: 10.1093/gbe/evx269.

5.

A method for single pair mating in an obligate parasitic nematode.

Sargison ND, Redman E, Morrison AA, Bartley DJ, Jackson F, Naghra-van Gijzel H, Holroyd N, Berriman M, Cotton JA, Gilleard JS.

Int J Parasitol. 2018 Feb;48(2):159-165. doi: 10.1016/j.ijpara.2017.08.010. Epub 2017 Oct 27.

PMID:
29111440
6.

A gene expression atlas of adult Schistosoma mansoni and their gonads.

Lu Z, Sessler F, Holroyd N, Hahnel S, Quack T, Berriman M, Grevelding CG.

Sci Data. 2017 Aug 22;4:170118. doi: 10.1038/sdata.2017.118.

7.

Stage-Specific Transcriptome and Proteome Analyses of the Filarial Parasite Onchocerca volvulus and Its Wolbachia Endosymbiont.

Bennuru S, Cotton JA, Ribeiro JM, Grote A, Harsha B, Holroyd N, Mhashilkar A, Molina DM, Randall AZ, Shandling AD, Unnasch TR, Ghedin E, Berriman M, Lustigman S, Nutman TB.

MBio. 2016 Nov 23;7(6). pii: e02028-16. doi: 10.1128/mBio.02028-16.

8.

The genome of Onchocerca volvulus, agent of river blindness.

Cotton JA, Bennuru S, Grote A, Harsha B, Tracey A, Beech R, Doyle SR, Dunn M, Hotopp JC, Holroyd N, Kikuchi T, Lambert O, Mhashilkar A, Mutowo P, Nursimulu N, Ribeiro JM, Rogers MB, Stanley E, Swapna LS, Tsai IJ, Unnasch TR, Voronin D, Parkinson J, Nutman TB, Ghedin E, Berriman M, Lustigman S.

Nat Microbiol. 2016 Nov 21;2:16216. doi: 10.1038/nmicrobiol.2016.216.

9.

Complete Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Java NCTC5706.

Fazal MA, Alexander S, Burnett E, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE.

Genome Announc. 2016 Nov 3;4(6). pii: e01219-16. doi: 10.1128/genomeA.01219-16.

10.

HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni.

Suttiprapa S, Rinaldi G, Tsai IJ, Mann VH, Dubrovsky L, Yan HB, Holroyd N, Huckvale T, Durrant C, Protasio AV, Pushkarsky T, Iordanskiy S, Berriman M, Bukrinsky MI, Brindley PJ.

PLoS Pathog. 2016 Oct 20;12(10):e1005931. doi: 10.1371/journal.ppat.1005931. eCollection 2016 Oct.

11.

Complete Genome Sequence of Plesiomonas shigelloides Type Strain NCTC10360.

Alexander S, Fazal MA, Burnett E, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE.

Genome Announc. 2016 Sep 22;4(5). pii: e01031-16. doi: 10.1128/genomeA.01031-16.

12.

Complete Genome Sequence of Neisseria weaveri Strain NCTC13585.

Alexander S, Fazal MA, Burnett E, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE.

Genome Announc. 2016 Aug 25;4(4). pii: e00815-16. doi: 10.1128/genomeA.00815-16.

13.

Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay.

Lu Z, Sessler F, Holroyd N, Hahnel S, Quack T, Berriman M, Grevelding CG.

Sci Rep. 2016 Aug 8;6:31150. doi: 10.1038/srep31150.

14.

Haemonchus contortus: Genome Structure, Organization and Comparative Genomics.

Laing R, Martinelli A, Tracey A, Holroyd N, Gilleard JS, Cotton JA.

Adv Parasitol. 2016;93:569-98. doi: 10.1016/bs.apar.2016.02.016. Epub 2016 Apr 11. Review.

PMID:
27238013
15.

Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection.

Crellen T, Allan F, David S, Durrant C, Huckvale T, Holroyd N, Emery AM, Rollinson D, Aanensen DM, Berriman M, Webster JP, Cotton JA.

Sci Rep. 2016 Feb 16;6:20954. doi: 10.1038/srep20954.

16.

The genomic basis of parasitism in the Strongyloides clade of nematodes.

Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, Bennett HM, Brooks K, Harsha B, Kajitani R, Kulkarni A, Harbecke D, Nagayasu E, Nichol S, Ogura Y, Quail MA, Randle N, Xia D, Brattig NW, Soblik H, Ribeiro DM, Sanchez-Flores A, Hayashi T, Itoh T, Denver DR, Grant W, Stoltzfus JD, Lok JB, Murayama H, Wastling J, Streit A, Kikuchi T, Viney M, Berriman M.

Nat Genet. 2016 Mar;48(3):299-307. doi: 10.1038/ng.3495. Epub 2016 Feb 1.

17.

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites.

Winter AD, Gillan V, Maitland K, Emes RD, Roberts B, McCormack G, Weir W, Protasio AV, Holroyd N, Berriman M, Britton C, Devaney E.

BMC Genomics. 2015 Apr 22;16:331. doi: 10.1186/s12864-015-1536-y.

18.

The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion.

Bennett HM, Mok HP, Gkrania-Klotsas E, Tsai IJ, Stanley EJ, Antoun NM, Coghlan A, Harsha B, Traini A, Ribeiro DM, Steinbiss S, Lucas SB, Allinson KS, Price SJ, Santarius TS, Carmichael AJ, Chiodini PL, Holroyd N, Dean AF, Berriman M.

Genome Biol. 2014;15(11):510.

19.

Whipworm genome and dual-species transcriptome analyses provide molecular insights into an intimate host-parasite interaction.

Foth BJ, Tsai IJ, Reid AJ, Bancroft AJ, Nichol S, Tracey A, Holroyd N, Cotton JA, Stanley EJ, Zarowiecki M, Liu JZ, Huckvale T, Cooper PJ, Grencis RK, Berriman M.

Nat Genet. 2014 Jul;46(7):693-700. doi: 10.1038/ng.3010. Epub 2014 Jun 15.

20.

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok V, Cock PJ, Eves-van den Akker S, Holroyd N, Hunt M, Mantelin S, Naghra H, Pain A, Palomares-Rius JE, Zarowiecki M, Berriman M, Jones JT, Urwin PE.

Genome Biol. 2014 Mar 3;15(3):R43. doi: 10.1186/gb-2014-15-3-r43.

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