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Items: 1 to 20 of 63

1.

Natural history bycatch: a pipeline for identifying metagenomic sequences in RADseq data.

Holmes I, Davis Rabosky AR.

PeerJ. 2018 Apr 16;6:e4662. doi: 10.7717/peerj.4662. eCollection 2018.

2.

Response.

Holmes I, Kim HG, Yang DH, Friedland S.

Gastrointest Endosc. 2017 Jul;86(1):251-252. doi: 10.1016/j.gie.2017.03.025. No abstract available.

PMID:
28610865
3.

Genetic diversity is largely unpredictable but scales with museum occurrences in a species-rich clade of Australian lizards.

Singhal S, Huang H, Title PO, Donnellan SC, Holmes I, Rabosky DL.

Proc Biol Sci. 2017 May 17;284(1854). pii: 20162588. doi: 10.1098/rspb.2016.2588.

4.

Endoscopic Mucosal Resection versus Endoscopic Submucosal Dissection for Large Polyps: A Western Colonoscopist's View.

Holmes I, Friedland S.

Clin Endosc. 2016 Sep;49(5):454-456. Epub 2016 Aug 26. Review.

5.

The Missing Tooth: A Curious Case of Postobstructive Pneumonia.

Holmes I, Gajurel K, Montoya J.

Open Forum Infect Dis. 2016 May 9;3(2):ofw088. doi: 10.1093/ofid/ofw088. eCollection 2016 Apr.

6.

Avulsion is superior to argon plasma coagulation for treatment of visible residual neoplasia during EMR of colorectal polyps (with videos).

Holmes I, Kim HG, Yang DH, Friedland S.

Gastrointest Endosc. 2016 Nov;84(5):822-829. doi: 10.1016/j.gie.2016.03.1512. Epub 2016 Apr 11.

PMID:
27080417
7.

Combining endoscopic submucosal dissection and endoscopic mucosal resection to treat neoplasia in Barrett's esophagus.

Holmes I, Hing T, Friedland S.

Surg Endosc. 2016 Dec;30(12):5330-5337. Epub 2016 Apr 12.

PMID:
27071930
8.

AAV ancestral reconstruction library enables selection of broadly infectious viral variants.

Santiago-Ortiz J, Ojala DS, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer DV.

Gene Ther. 2015 Dec;22(12):934-46. doi: 10.1038/gt.2015.74. Epub 2015 Jul 17.

9.

How Good Is Good Enough? Lymph Node Metastasis After Endoscopic Resection of a Rectosigmoid Polyp.

Holmes I, Triadafilopoulos G, Jensen K, Friedland S.

Dig Dis Sci. 2016 Mar;61(3):704-7. doi: 10.1007/s10620-015-3785-7. Epub 2015 Jul 2. No abstract available.

PMID:
26134989
10.

Temporal population genetic instability in range-edge western toads, Anaxyrus boreas.

Holmes I.

J Hered. 2015 Jan-Feb;106(1):45-56. doi: 10.1093/jhered/esu068. Epub 2014 Nov 27.

PMID:
25433082
11.

Avoiding re-inventing the wheel in a people-centered approach to REDD+.

Holmes I, Potvin C.

Conserv Biol. 2014 Oct;28(5):1380-93. doi: 10.1111/cobi.12301. Epub 2014 Apr 24.

PMID:
24762062
12.

Acute Renal Failure and Jaundice without Methemoglobinemia in a Patient with Phenazopyridine Overdose: Case Report and Review of the Literature.

Holmes I, Berman N, Domingues V.

Case Rep Nephrol. 2014;2014:845372. doi: 10.1155/2014/845372. Epub 2014 Mar 5.

13.

A radiographic study of the ossification of the posterior wall of the acetabulum: implications for the diagnosis of pediatric and adolescent hip disorders.

Fabricant PD, Hirsch BP, Holmes I, Kelly BT, Lorich DG, Helfet DL, Bogner EA, Green DW.

J Bone Joint Surg Am. 2013 Feb 6;95(3):230-6. doi: 10.2106/JBJS.L.00592.

PMID:
23389786
14.

Fitting Birth-Death Processes to Panel Data with Applications to Bacterial DNA Fingerprinting.

Doss CR, Suchard MA, Holmes I, Kato-Maeda M, Minin VN.

Ann Appl Stat. 2013;7(4):2315-2335.

15.

Estimating empirical codon hidden Markov models.

De Maio N, Holmes I, Schlötterer C, Kosiol C.

Mol Biol Evol. 2013 Mar;30(3):725-36. doi: 10.1093/molbev/mss266. Epub 2012 Nov 27.

16.

Developing and applying heterogeneous phylogenetic models with XRate.

Westesson O, Holmes I.

PLoS One. 2012;7(6):e36898. doi: 10.1371/journal.pone.0036898. Epub 2012 Jun 5.

17.

Accurate reconstruction of insertion-deletion histories by statistical phylogenetics.

Westesson O, Lunter G, Paten B, Holmes I.

PLoS One. 2012;7(4):e34572. doi: 10.1371/journal.pone.0034572. Epub 2012 Apr 20.

18.

Visualizing next-generation sequencing data with JBrowse.

Westesson O, Skinner M, Holmes I.

Brief Bioinform. 2013 Mar;14(2):172-7. doi: 10.1093/bib/bbr078. Epub 2012 Mar 12.

19.

Dirichlet multinomial mixtures: generative models for microbial metagenomics.

Holmes I, Harris K, Quince C.

PLoS One. 2012;7(2):e30126. doi: 10.1371/journal.pone.0030126. Epub 2012 Feb 3.

20.

HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction.

Westesson O, Barquist L, Holmes I.

Bioinformatics. 2012 Apr 15;28(8):1170-1. doi: 10.1093/bioinformatics/bts058. Epub 2012 Jan 28.

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