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Items: 1 to 20 of 42


Linking spatial gene expression patterns to sex-specific brain structural changes on a mouse model of 16p11.2 hemideletion.

Kumar VJ, Grissom NM, McKee SE, Schoch H, Bowman N, Havekes R, Kumar M, Pickup S, Poptani H, Reyes TM, Hawrylycz M, Abel T, Nickl-Jockschat T.

Transl Psychiatry. 2018 May 29;8(1):109. doi: 10.1038/s41398-018-0157-z.


Generalized leaky integrate-and-fire models classify multiple neuron types.

Teeter C, Iyer R, Menon V, Gouwens N, Feng D, Berg J, Szafer A, Cain N, Zeng H, Hawrylycz M, Koch C, Mihalas S.

Nat Commun. 2018 Feb 19;9(1):709. doi: 10.1038/s41467-017-02717-4.


SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.

Long B, Zhou Z, Cetin A, Ting J, Gwinn R, Tasic B, Daigle T, Lein E, Zeng H, Saggau P, Hawrylycz M, Peng H.

Sci Rep. 2017 Aug 24;7(1):9325. doi: 10.1038/s41598-017-10067-w.


Transcriptomic Perspectives on Neocortical Structure, Development, Evolution, and Disease.

Lein ES, Belgard TG, Hawrylycz M, Molnár Z.

Annu Rev Neurosci. 2017 Jul 25;40:629-652. doi: 10.1146/annurev-neuro-070815-013858. Epub 2017 Jun 29. Review.


Automatic tracing of ultra-volumes of neuronal images.

Peng H, Zhou Z, Meijering E, Zhao T, Ascoli GA, Hawrylycz M.

Nat Methods. 2017 Mar 31;14(4):332-333. doi: 10.1038/nmeth.4233. No abstract available.


Reconstructing the brain: from image stacks to neuron synthesis.

Shillcock JC, Hawrylycz M, Hill S, Peng H.

Brain Inform. 2016 Dec;3(4):205-209. Epub 2016 Feb 24.


Inferring cortical function in the mouse visual system through large-scale systems neuroscience.

Hawrylycz M, Anastassiou C, Arkhipov A, Berg J, Buice M, Cain N, Gouwens NW, Gratiy S, Iyer R, Lee JH, Mihalas S, Mitelut C, Olsen S, Reid RC, Teeter C, de Vries S, Waters J, Zeng H, Koch C; MindScope.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):7337-44. doi: 10.1073/pnas.1512901113.


Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.

Tasic B, Menon V, Nguyen TN, Kim TK, Jarsky T, Yao Z, Levi B, Gray LT, Sorensen SA, Dolbeare T, Bertagnolli D, Goldy J, Shapovalova N, Parry S, Lee C, Smith K, Bernard A, Madisen L, Sunkin SM, Hawrylycz M, Koch C, Zeng H.

Nat Neurosci. 2016 Feb;19(2):335-46. doi: 10.1038/nn.4216. Epub 2016 Jan 4.


Canonical genetic signatures of the adult human brain.

Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, Grange P, Berman KA, Mihalas S, Yao Z, Stewart L, Barabási AL, Schulkin J, Phillips J, Ng L, Dang C, Haynor DR, Jones A, Van Essen DC, Koch C, Lein E.

Nat Neurosci. 2015 Dec;18(12):1832-44. doi: 10.1038/nn.4171. Epub 2015 Nov 16.


BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images.

Peng H, Hawrylycz M, Roskams J, Hill S, Spruston N, Meijering E, Ascoli GA.

Neuron. 2015 Jul 15;87(2):252-6. doi: 10.1016/j.neuron.2015.06.036.


Cell-type-specific neuroanatomy of cliques of autism-related genes in the mouse brain.

Grange P, Menashe I, Hawrylycz M.

Front Comput Neurosci. 2015 May 29;9:55. doi: 10.3389/fncom.2015.00055. eCollection 2015.


BRAIN NETWORKS. Correlated gene expression supports synchronous activity in brain networks.

Richiardi J, Altmann A, Milazzo AC, Chang C, Chakravarty MM, Banaschewski T, Barker GJ, Bokde AL, Bromberg U, Büchel C, Conrod P, Fauth-Bühler M, Flor H, Frouin V, Gallinat J, Garavan H, Gowland P, Heinz A, Lemaître H, Mann KF, Martinot JL, Nees F, Paus T, Pausova Z, Rietschel M, Robbins TW, Smolka MN, Spanagel R, Ströhle A, Schumann G, Hawrylycz M, Poline JB, Greicius MD; IMAGEN consortium.

Science. 2015 Jun 12;348(6240):1241-4. doi: 10.1126/science.1255905. Epub 2015 Jun 11.


BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies.

Wan Y, Long F, Qu L, Xiao H, Hawrylycz M, Myers EW, Peng H.

Neuroinformatics. 2015 Oct;13(4):487-99. doi: 10.1007/s12021-015-9272-7.


Spatial mapping of multi-modal data in neuroscience.

Hawrylycz M, Sunkin S, Ng L.

Methods. 2015 Feb;73:1-3. doi: 10.1016/j.ymeth.2015.01.011. No abstract available.


Exploration and visualization of connectivity in the adult mouse brain.

Feng D, Lau C, Ng L, Li Y, Kuan L, Sunkin SM, Dang C, Hawrylycz M.

Methods. 2015 Feb;73:90-7. doi: 10.1016/j.ymeth.2015.01.009. Epub 2015 Jan 27.


Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.

Kuan L, Li Y, Lau C, Feng D, Bernard A, Sunkin SM, Zeng H, Dang C, Hawrylycz M, Ng L.

Methods. 2015 Feb;73:4-17. doi: 10.1016/j.ymeth.2014.12.013. Epub 2014 Dec 20. Review.


Cortical fast-spiking parvalbumin interneurons enwrapped in the perineuronal net express the metallopeptidases Adamts8, Adamts15 and Neprilysin.

Rossier J, Bernard A, Cabungcal JH, Perrenoud Q, Savoye A, Gallopin T, Hawrylycz M, Cuénod M, Do K, Urban A, Lein ES.

Mol Psychiatry. 2015 Feb;20(2):154-61. doi: 10.1038/mp.2014.162. Epub 2014 Dec 16.


Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures.

Zhou Z, Sorensen S, Zeng H, Hawrylycz M, Peng H.

Neuroinformatics. 2015 Apr;13(2):153-66. doi: 10.1007/s12021-014-9249-y.


Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J, Mitra A, Tsien RW, Zeng H, Ascoli GA, Iannello G, Hawrylycz M, Myers E, Long F.

Nat Commun. 2014 Jul 11;5:4342. doi: 10.1038/ncomms5342.


The genetic geography of the brain.

Lein E, Hawrylycz M.

Sci Am. 2014 Apr;310(4):70-7. No abstract available.


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