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Items: 1 to 20 of 265


When COI barcodes deceive: complete genomes reveal introgression in hairstreaks.

Cong Q, Shen J, Borek D, Robbins RK, Opler PA, Otwinowski Z, Grishin NV.

Proc Biol Sci. 2017 Feb 8;284(1848). pii: 20161735. doi: 10.1098/rspb.2016.1735.


Complete genome of Pieris rapae, a resilient alien, a cabbage pest, and a source of anti-cancer proteins.

Shen J, Cong Q, Kinch LN, Borek D, Otwinowski Z, Grishin NV.

F1000Res. 2016 Nov 3;5:2631. doi: 10.12688/f1000research.9765.1.


Expansion of divergent SEA domains in cell surface proteins and nucleoporin 54.

Pei J, Grishin NV.

Protein Sci. 2016 Dec 15. doi: 10.1002/pro.3096. [Epub ahead of print]


ECOD: new developments in the evolutionary classification of domains.

Schaeffer RD, Liao Y, Cheng H, Grishin NV.

Nucleic Acids Res. 2017 Jan 4;45(D1):D296-D302. doi: 10.1093/nar/gkw1137.


Structure of protein O-mannose kinase reveals a unique active site architecture.

Zhu Q, Venzke D, Walimbe AS, Anderson ME, Fu Q, Kinch LN, Wang W, Chen X, Grishin NV, Huang N, Yu L, Dixon JE, Campbell KP, Xiao J.

Elife. 2016 Nov 23;5. pii: e22238. doi: 10.7554/eLife.22238.


Long-Range Epistasis Mediated by Structural Change in a Model of Ligand Binding Proteins.

Nelson ED, Grishin NV.

PLoS One. 2016 Nov 21;11(11):e0166739. doi: 10.1371/journal.pone.0166739.


Pyrimidine Salvage Enzymes Are Essential for De Novo Biosynthesis of Deoxypyrimidine Nucleotides in Trypanosoma brucei.

Leija C, Rijo-Ferreira F, Kinch LN, Grishin NV, Nischan N, Kohler JJ, Hu Z, Phillips MA.

PLoS Pathog. 2016 Nov 7;12(11):e1006010. doi: 10.1371/journal.ppat.1006010.


Evolution of off-lattice model proteins under ligand binding constraints.

Nelson ED, Grishin NV.

Phys Rev E. 2016 Aug;94(2-1):022410. doi: 10.1103/PhysRevE.94.022410.


Compact Structure Patterns in Proteins.

Chitturi B, Shi S, Kinch LN, Grishin NV.

J Mol Biol. 2016 Oct 23;428(21):4392-4412. doi: 10.1016/j.jmb.2016.07.022.


Proteomics Analysis Reveals Previously Uncharacterized Virulence Factors in Vibrio proteolyticus.

Ray A, Kinch LN, de Souza Santos M, Grishin NV, Orth K, Salomon D.

MBio. 2016 Jul 26;7(4). pii: e01077-16. doi: 10.1128/mBio.01077-16.


HP1BP3, a Chromatin Retention Factor for Co-transcriptional MicroRNA Processing.

Liu H, Liang C, Kollipara RK, Matsui M, Ke X, Jeong BC, Wang Z, Yoo KS, Yadav GP, Kinch LN, Grishin NV, Nam Y, Corey DR, Kittler R, Liu Q.

Mol Cell. 2016 Aug 4;63(3):420-32. doi: 10.1016/j.molcel.2016.06.014.


Bile salt receptor complex activates a pathogenic type III secretion system.

Li P, Rivera-Cancel G, Kinch LN, Salomon D, Tomchick DR, Grishin NV, Orth K.

Elife. 2016 Jul 5;5. pii: e15718. doi: 10.7554/eLife.15718.


Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.

Bromberg R, Grishin NV, Otwinowski Z.

PLoS Comput Biol. 2016 Jun 23;12(6):e1004985. doi: 10.1371/journal.pcbi.1004985.


Estimation of Uncertainties in the Global Distance Test (GDT_TS) for CASP Models.

Li W, Schaeffer RD, Otwinowski Z, Grishin NV.

PLoS One. 2016 May 5;11(5):e0154786. doi: 10.1371/journal.pone.0154786.


Crystal structure of the human sterol transporter ABCG5/ABCG8.

Lee JY, Kinch LN, Borek DM, Wang J, Wang J, Urbatsch IL, Xie XS, Grishin NV, Cohen JC, Otwinowski Z, Hobbs HH, Rosenbaum DM.

Nature. 2016 May 26;533(7604):561-4. doi: 10.1038/nature17666.


Complete genomes of Hairstreak butterflies, their speciation, and nucleo-mitochondrial incongruence.

Cong Q, Shen J, Borek D, Robbins RK, Otwinowski Z, Grishin NV.

Sci Rep. 2016 Apr 28;6:24863. doi: 10.1038/srep24863.


Direct Demonstration That Loop1 of Scap Binds to Loop7: A CRUCIAL EVENT IN CHOLESTEROL HOMEOSTASIS.

Zhang Y, Lee KM, Kinch LN, Clark L, Grishin NV, Rosenbaum DM, Brown MS, Goldstein JL, Radhakrishnan A.

J Biol Chem. 2016 Jun 10;291(24):12888-96. doi: 10.1074/jbc.M116.729798.


Speciation in Cloudless Sulphurs Gleaned from Complete Genomes.

Cong Q, Shen J, Warren AD, Borek D, Otwinowski Z, Grishin NV.

Genome Biol Evol. 2016 Mar 30;8(3):915-31. doi: 10.1093/gbe/evw045.


Absence of TLR11 in Mice Does Not Confer Susceptibility to Salmonella Typhi.

Song J, Wilhelm CL, Wangdi T, Maira-Litran T, Lee SJ, Raetz M, Sturge CR, Mirpuri J, Pei J, Grishin NV, McSorley SJ, Gewirtz AT, Bäumler AJ, Pier GB, Galán JE, Yarovinsky F.

Cell. 2016 Feb 25;164(5):827-8. doi: 10.1016/j.cell.2016.02.015. No abstract available.


Assessment of CASP11 contact-assisted predictions.

Kinch LN, Li W, Monastyrskyy B, Kryshtafovych A, Grishin NV.

Proteins. 2016 Sep;84 Suppl 1:164-80. doi: 10.1002/prot.25020.

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