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Items: 1 to 20 of 34

1.

Response to Comment on "Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment".

Chandra S, Wingender G, Greenbaum JA, Kronenberg M.

J Immunol. 2018 May 15;200(10):3317-3318. doi: 10.4049/jimmunol.1800397. No abstract available.

PMID:
29735642
2.

Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis.

Burel JG, Lindestam Arlehamn CS, Khan N, Seumois G, Greenbaum JA, Taplitz R, Gilman RH, Saito M, Vijayanand P, Sette A, Peters B.

J Immunol. 2018 May 1;200(9):3283-3290. doi: 10.4049/jimmunol.1800118. Epub 2018 Mar 30.

PMID:
29602771
3.

Development of Asthma in Inner-City Children: Possible Roles of MAIT Cells and Variation in the Home Environment.

Chandra S, Wingender G, Greenbaum JA, Khurana A, Gholami AM, Ganesan AP, Rosenbach M, Jaffee K, Gern JE, Wood R, O'Connor G, Sandel M, Kattan M, Bacharier L, Togias A, Horner AA, Kronenberg M.

J Immunol. 2018 Mar 15;200(6):1995-2003. doi: 10.4049/jimmunol.1701525. Epub 2018 Feb 5.

PMID:
29431692
4.

Improved methods for predicting peptide binding affinity to MHC class II molecules.

Jensen KK, Andreatta M, Marcatili P, Buus S, Greenbaum JA, Yan Z, Sette A, Peters B, Nielsen M.

Immunology. 2018 Jul;154(3):394-406. doi: 10.1111/imm.12889. Epub 2018 Feb 6.

PMID:
29315598
5.

An automated benchmarking platform for MHC class II binding prediction methods.

Andreatta M, Trolle T, Yan Z, Greenbaum JA, Peters B, Nielsen M.

Bioinformatics. 2018 May 1;34(9):1522-1528. doi: 10.1093/bioinformatics/btx820.

PMID:
29281002
6.

Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA.

Tian Y, Babor M, Lane J, Schulten V, Patil VS, Seumois G, Rosales SL, Fu Z, Picarda G, Burel J, Zapardiel-Gonzalo J, Tennekoon RN, De Silva AD, Premawansa S, Premawansa G, Wijewickrama A, Greenbaum JA, Vijayanand P, Weiskopf D, Sette A, Peters B.

Nat Commun. 2017 Nov 13;8(1):1473. doi: 10.1038/s41467-017-01728-5.

7.

Immunodominance in allergic T-cell reactivity to Japanese cedar in different geographic cohorts.

Oseroff C, Pham J, Frazier A, Hinz D, Sidney J, Paul S, Greenbaum JA, Vita R, Peters B, Schulten V, Sette A.

Ann Allergy Asthma Immunol. 2016 Dec;117(6):680-689.e1. doi: 10.1016/j.anai.2016.10.014. Erratum in: Ann Allergy Asthma Immunol. 2017 Mar;118(3):384.

8.

T-cell epitope conservation across allergen species is a major determinant of immunogenicity.

Westernberg L, Schulten V, Greenbaum JA, Natali S, Tripple V, McKinney DM, Frazier A, Hofer H, Wallner M, Sallusto F, Sette A, Peters B.

J Allergy Clin Immunol. 2016 Aug;138(2):571-578.e7. doi: 10.1016/j.jaci.2015.11.034. Epub 2016 Feb 13.

9.

Lack of allergy to timothy grass pollen is not a passive phenomenon but associated with the allergen-specific modulation of immune reactivity.

Hinz D, Seumois G, Gholami AM, Greenbaum JA, Lane J, White B, Broide DH, Schulten V, Sidney J, Bakhru P, Oseroff C, Wambre E, James EA, Kwok WW, Peters B, Vijayanand P, Sette A.

Clin Exp Allergy. 2016 May;46(5):705-19. doi: 10.1111/cea.12692.

10.

Development and validation of a sample sparing strategy for HLA typing utilizing next generation sequencing.

McKinney DM, Fu Z, Le L, Greenbaum JA, Peters B, Sette A.

Hum Immunol. 2015 Dec;76(12):917-22. doi: 10.1016/j.humimm.2015.04.007. Epub 2015 May 28.

11.

IL-10-producing intestinal macrophages prevent excessive antibacterial innate immunity by limiting IL-23 synthesis.

Krause P, Morris V, Greenbaum JA, Park Y, Bjoerheden U, Mikulski Z, Muffley T, Shui JW, Kim G, Cheroutre H, Liu YC, Peters B, Kronenberg M, Murai M.

Nat Commun. 2015 May 11;6:7055. doi: 10.1038/ncomms8055.

12.

Dengue Virus Evolution under a Host-Targeted Antiviral.

Plummer E, Buck MD, Sanchez M, Greenbaum JA, Turner J, Grewal R, Klose B, Sampath A, Warfield KL, Peters B, Ramstedt U, Shresta S.

J Virol. 2015 May;89(10):5592-601. doi: 10.1128/JVI.00028-15. Epub 2015 Mar 11.

13.

Automated benchmarking of peptide-MHC class I binding predictions.

Trolle T, Metushi IG, Greenbaum JA, Kim Y, Sidney J, Lund O, Sette A, Peters B, Nielsen M.

Bioinformatics. 2015 Jul 1;31(13):2174-81. doi: 10.1093/bioinformatics/btv123. Epub 2015 Feb 25.

14.

Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes.

Lindestam Arlehamn CS, Paul S, Mele F, Huang C, Greenbaum JA, Vita R, Sidney J, Peters B, Sallusto F, Sette A.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):E147-55. doi: 10.1073/pnas.1416537112. Epub 2014 Dec 29.

15.

The immune epitope database (IEDB) 3.0.

Vita R, Overton JA, Greenbaum JA, Ponomarenko J, Clark JD, Cantrell JR, Wheeler DK, Gabbard JL, Hix D, Sette A, Peters B.

Nucleic Acids Res. 2015 Jan;43(Database issue):D405-12. doi: 10.1093/nar/gku938. Epub 2014 Oct 9.

16.

Properties of MHC class I presented peptides that enhance immunogenicity.

Calis JJ, Maybeno M, Greenbaum JA, Weiskopf D, De Silva AD, Sette A, KeĊŸmir C, Peters B.

PLoS Comput Biol. 2013 Oct;9(10):e1003266. doi: 10.1371/journal.pcbi.1003266. Epub 2013 Oct 24.

17.

Query enhancement through the practical application of ontology: the IEDB and OBI.

Vita R, Overton JA, Greenbaum JA, Sette A; OBI consortium, Peters B.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S6. doi: 10.1186/2041-1480-4-S1-S6. Epub 2013 Apr 15.

18.

Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8+ T cells.

Weiskopf D, Angelo MA, de Azeredo EL, Sidney J, Greenbaum JA, Fernando AN, Broadwater A, Kolla RV, De Silva AD, de Silva AM, Mattia KA, Doranz BJ, Grey HM, Shresta S, Peters B, Sette A.

Proc Natl Acad Sci U S A. 2013 May 28;110(22):E2046-53. doi: 10.1073/pnas.1305227110. Epub 2013 Apr 11.

19.

Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals.

Schulten V, Greenbaum JA, Hauser M, McKinney DM, Sidney J, Kolla R, Lindestam Arlehamn CS, Oseroff C, Alam R, Broide DH, Ferreira F, Grey HM, Sette A, Peters B.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3459-64. doi: 10.1073/pnas.1300512110. Epub 2013 Feb 11. Erratum in: Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5269. Ferreira-Briza, Fatima [corrected to Ferreira, Fatima]. Proc Natl Acad Sci U S A. 2013 May 21;110(21):8750.

20.

Memory T cells in latent Mycobacterium tuberculosis infection are directed against three antigenic islands and largely contained in a CXCR3+CCR6+ Th1 subset.

Lindestam Arlehamn CS, Gerasimova A, Mele F, Henderson R, Swann J, Greenbaum JA, Kim Y, Sidney J, James EA, Taplitz R, McKinney DM, Kwok WW, Grey H, Sallusto F, Peters B, Sette A.

PLoS Pathog. 2013 Jan;9(1):e1003130. doi: 10.1371/journal.ppat.1003130. Epub 2013 Jan 24.

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