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Items: 1 to 20 of 163


Hepatitis C virus intrinsic molecular determinants may contribute to the development of cholestatic hepatitis after liver transplantation.

Gambato M, Gregori J, Quer J, Koutsoudakis G, González P, Caro-Pérez N, García-Cehic D, García-González N, González-Candelas F, Esteban JI, Crespo G, Navasa M, Forns X, Pérez-Del-Pulgar S.

J Gen Virol. 2019 Jan;100(1):63-68. doi: 10.1099/jgv.0.001175. Epub 2018 Nov 19.


An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides.

Domingo-Calap P, Schubert B, Joly M, Solis M, Untrau M, Carapito R, Georgel P, Caillard S, Fafi-Kremer S, Paul N, Kohlbacher O, González-Candelas F, Bahram S.

PLoS Pathog. 2018 Oct 18;14(10):e1007368. doi: 10.1371/journal.ppat.1007368. eCollection 2018 Oct.


Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish university hospital.

Barragán-Prada H, Ruiz-Hueso P, Tedim AP, González-Candelas F, Galán JC, Cantón R, Morosini MI.

Diagn Microbiol Infect Dis. 2019 Feb;93(2):147-153. doi: 10.1016/j.diagmicrobio.2018.08.014. Epub 2018 Sep 8.


Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F1.

Patiño-Galindo JÁ, Domínguez F, Cuevas MT, Delgado E, Sánchez M, Pérez-Álvarez L, Thomson MM, Sanjuán R, González-Candelas F, Cuevas JM.

Infect Genet Evol. 2018 Dec;66:43-47. doi: 10.1016/j.meegid.2018.09.008. Epub 2018 Sep 13.


Hepatitis C virus early kinetics and resistance-associated substitution dynamics during antiviral therapy with direct-acting antivirals.

Perpiñán E, Caro-Pérez N, García-González N, Gregori J, González P, Bartres C, Soria ME, Perales C, Lens S, Mariño Z, Londoño MC, Ariza X, Koutsoudakis G, Quer J, González-Candelas F, Forns X, Pérez-Del-Pulgar S.

J Viral Hepat. 2018 Dec;25(12):1515-1525. doi: 10.1111/jvh.12986. Epub 2018 Oct 4.


Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme.

Grillová L, Bawa T, Mikalová L, Gayet-Ageron A, Nieselt K, Strouhal M, Sednaoui P, Ferry T, Cavassini M, Lautenschlager S, Dutly F, Pla-Díaz M, Krützen M, González-Candelas F, Bagheri HC, Šmajs D, Arora N, Bosshard PP.

PLoS One. 2018 Jul 30;13(7):e0200773. doi: 10.1371/journal.pone.0200773. eCollection 2018.


Molecular evolution methods to study HIV-1 epidemics.

Patiño-Galindo JÁ, González-Candelas F.

Future Virol. 2018 May;13(6):399-404. doi: 10.2217/fvl-2017-0159. Epub 2018 May 21. Review.


The substitution rate of HIV-1 subtypes: a genomic approach.

Patiño-Galindo JÁ, González-Candelas F.

Virus Evol. 2017 Oct 20;3(2):vex029. doi: 10.1093/ve/vex029. eCollection 2017 Jul.


Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity.

Chiner-Oms Á, González-Candelas F, Comas I.

Sci Rep. 2018 Feb 28;8(1):3813. doi: 10.1038/s41598-018-22237-5.


Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C.

Front Microbiol. 2018 Jan 5;8:2613. doi: 10.3389/fmicb.2017.02613. eCollection 2017.


Reanalysis of Chinese Treponema pallidum samples: all Chinese samples cluster with SS14-like group of syphilis-causing treponemes.

Strouhal M, Oppelt J, Mikalová L, Arora N, Nieselt K, González-Candelas F, Šmajs D.

BMC Res Notes. 2018 Jan 11;11(1):16. doi: 10.1186/s13104-017-3106-7.


The effect of RNA substitution models on viroid and RNA virus phylogenies.

Patiño Galindo JÁ, González Candelas F, Pybus OG.

Genome Biol Evol. 2018 Jan 9. doi: 10.1093/gbe/evx273. [Epub ahead of print]


Genotypes and subgenotypes of hepatitis B virus circulating in an endemic area in Peru.

Ramírez-Soto MC, Bracho MA, González-Candelas F, Huichi-Atamari M.

Arch Virol. 2018 Jan;163(1):183-189. doi: 10.1007/s00705-017-3557-0. Epub 2017 Sep 25.


The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters.

Patiño-Galindo JÁ, Torres-Puente M, Bracho MA, Alastrué I, Juan A, Navarro D, Galindo MJ, Ocete D, Ortega E, Gimeno C, Belda J, Domínguez V, Moreno R, González-Candelas F.

Sci Rep. 2017 Sep 14;7(1):11584. doi: 10.1038/s41598-017-10286-1.


The impact of virus population diversity on the dynamics of cytomegalovirus DNAemia in allogeneic stem cell transplant recipients.

Vinuesa V, Bracho MA, Albert E, Solano C, Torres-Puente M, Giménez E, González-Candelas F, Navarro D.

J Gen Virol. 2017 Oct;98(10):2530-2542. doi: 10.1099/jgv.0.000916. Epub 2017 Sep 6.


Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing.

Caro-Pérez N, Martínez-Rebollar M, Gregori J, Quer J, González P, Gambato M, García-González N, González-Candelas F, Costa J, Esteban JI, Mallolas J, Forns X, Laguno M, Pérez-Del-Pulgar S.

J Clin Virol. 2017 Jul;92:42-47. doi: 10.1016/j.jcv.2017.05.008. Epub 2017 May 10.


Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain.

Patiño-Galindo JÁ, Torres-Puente M, Bracho MA, Alastrué I, Juan A, Navarro D, Galindo MJ, Gimeno C, Ortega E, González-Candelas F.

PLoS One. 2017 Feb 2;12(2):e0171062. doi: 10.1371/journal.pone.0171062. eCollection 2017.


Comparative analysis of variation and selection in the HCV genome.

Patiño-Galindo JÁ, González-Candelas F.

Infect Genet Evol. 2017 Apr;49:104-110. doi: 10.1016/j.meegid.2017.01.010. Epub 2017 Jan 10.


EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers.

Chiner-Oms A, González-Candelas F.

Evol Bioinform Online. 2016 Nov 28;12:277-284. eCollection 2016.


Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.

Arora N, Schuenemann VJ, Jäger G, Peltzer A, Seitz A, Herbig A, Strouhal M, Grillová L, Sánchez-Busó L, Kühnert D, Bos KI, Davis LR, Mikalová L, Bruisten S, Komericki P, French P, Grant PR, Pando MA, Vaulet LG, Fermepin MR, Martinez A, Centurion Lara A, Giacani L, Norris SJ, Šmajs D, Bosshard PP, González-Candelas F, Nieselt K, Krause J, Bagheri HC.

Nat Microbiol. 2016 Dec 5;2:16245. doi: 10.1038/nmicrobiol.2016.245.

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