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Items: 1 to 20 of 67

1.

Noncanonical CTD kinases regulate RNA polymerase II in a gene-class-specific manner.

Nemec CM, Singh AK, Ali A, Tseng SC, Syal K, Ringelberg KJ, Ho YH, Hintermair C, Ahmad MF, Kar RK, Gasch AP, Akhtar MS, Eick D, Ansari AZ.

Nat Chem Biol. 2018 Dec 31. doi: 10.1038/s41589-018-0194-1. [Epub ahead of print]

PMID:
30598543
2.

Independent Mechanisms for Acquired Salt Tolerance versus Growth Resumption Induced by Mild Ethanol Pretreatment in Saccharomyces cerevisiae.

McDaniel EA, Stuecker TN, Veluvolu M, Gasch AP, Lewis JA.

mSphere. 2018 Nov 28;3(6). pii: e00574-18. doi: 10.1128/mSphere.00574-18.

3.

Genotype-by-Environment-by-Environment Interactions in the Saccharomyces cerevisiae Transcriptomic Response to Alcohols and Anaerobiosis.

Sardi M, Krause M, Heilberger J, Gasch AP.

G3 (Bethesda). 2018 Dec 10;8(12):3881-3890. doi: 10.1534/g3.118.200677.

4.

Decoupling Yeast Cell Division and Stress Defense Implicates mRNA Repression in Translational Reallocation during Stress.

Ho YH, Shishkova E, Hose J, Coon JJ, Gasch AP.

Curr Biol. 2018 Aug 20;28(16):2673-2680.e4. doi: 10.1016/j.cub.2018.06.044. Epub 2018 Aug 2.

PMID:
30078561
5.

Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast.

Higgins DA, Young MKM, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, Thelen MP, Sato TK.

Genetics. 2018 Sep;210(1):219-234. doi: 10.1534/genetics.118.301161. Epub 2018 Jul 25.

6.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.

MacGilvray ME, Shishkova E, Chasman D, Place M, Gitter A, Coon JJ, Gasch AP.

PLoS Comput Biol. 2018 May 8;13(5):e1006088. doi: 10.1371/journal.pcbi.1006088. eCollection 2018 May.

7.

Genetic background effects in quantitative genetics: gene-by-system interactions.

Sardi M, Gasch AP.

Curr Genet. 2018 Dec;64(6):1173-1176. doi: 10.1007/s00294-018-0835-7. Epub 2018 Apr 11. Review.

PMID:
29644456
8.

Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance.

Sardi M, Paithane V, Place M, Robinson E, Hose J, Wohlbach DJ, Gasch AP.

PLoS Genet. 2018 Feb 23;14(2):e1007217. doi: 10.1371/journal.pgen.1007217. eCollection 2018 Feb.

9.

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress.

Gasch AP, Yu FB, Hose J, Escalante LE, Place M, Bacher R, Kanbar J, Ciobanu D, Sandor L, Grigoriev IV, Kendziorski C, Quake SR, McClean MN.

PLoS Biol. 2017 Dec 14;15(12):e2004050. doi: 10.1371/journal.pbio.2004050. eCollection 2017 Dec.

10.

Reply to Hogan: Direct evidence of RNA-protein interactions and rewiring.

Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M.

Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):E10854-E10855. doi: 10.1073/pnas.1717585114. Epub 2017 Dec 5. No abstract available.

11.

Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.

Cesnik AJ, Shortreed MR, Schaffer LV, Knoener RA, Frey BL, Scalf M, Solntsev SK, Dai Y, Gasch AP, Smith LM.

J Proteome Res. 2018 Jan 5;17(1):568-578. doi: 10.1021/acs.jproteome.7b00685. Epub 2017 Dec 15.

12.

The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans.

Muir VS, Gasch AP, Anderson P.

G3 (Bethesda). 2018 Jan 4;8(1):195-205. doi: 10.1534/g3.117.300254.

13.

Multiplexed Sequence-Specific Capture of Chromatin and Mass Spectrometric Discovery of Associated Proteins.

Dai Y, Kennedy-Darling J, Shortreed MR, Scalf M, Gasch AP, Smith LM.

Anal Chem. 2017 Aug 1;89(15):7841-7846. doi: 10.1021/acs.analchem.7b01784. Epub 2017 Jul 11.

14.

Incorporating comparative genomics into the design-test-learn cycle of microbial strain engineering.

Sardi M, Gasch AP.

FEMS Yeast Res. 2017 Aug 1;17(5). doi: 10.1093/femsyr/fox042. Review.

PMID:
28637316
15.

Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner.

Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3944-E3953. doi: 10.1073/pnas.1700128114. Epub 2017 May 2.

16.

SCnorm: robust normalization of single-cell RNA-seq data.

Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C.

Nat Methods. 2017 Jun;14(6):584-586. doi: 10.1038/nmeth.4263. Epub 2017 Apr 17.

17.

Recurrent rewiring and emergence of RNA regulatory networks.

Wilinski D, Buter N, Klocko AD, Lapointe CP, Selker EU, Gasch AP, Wickens M.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):E2816-E2825. doi: 10.1073/pnas.1617777114. Epub 2017 Mar 20.

18.

Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.

Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, Tian M, Piotrowski JS, Reed JL, Zhang Y, Coon JJ, Hittinger CT, Gasch AP, Landick R.

PLoS Genet. 2016 Nov 9;12(11):e1006447. doi: 10.1371/journal.pgen.1006447. eCollection 2016 Nov.

19.

Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.

Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, Tian M, Reed JL, Zhang Y, Coon JJ, Hittinger CT, Gasch AP, Landick R.

PLoS Genet. 2016 Oct 14;12(10):e1006372. doi: 10.1371/journal.pgen.1006372. eCollection 2016 Oct. Erratum in: PLoS Genet. 2016 Nov 9;12 (11):e1006447.

20.

Leveraging Genetic-Background Effects in Saccharomyces cerevisiae To Improve Lignocellulosic Hydrolysate Tolerance.

Sardi M, Rovinskiy N, Zhang Y, Gasch AP.

Appl Environ Microbiol. 2016 Sep 16;82(19):5838-49. doi: 10.1128/AEM.01603-16. Print 2016 Oct 1.

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