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Items: 1 to 20 of 47

1.

Activated microglia/macrophage whey acidic protein (AMWAP) inhibits NFκB signaling and induces a neuroprotective phenotype in microglia.

Aslanidis A, Karlstetter M, Scholz R, Fauser S, Neumann H, Fried C, Pietsch M, Langmann T.

J Neuroinflammation. 2015 Apr 19;12:77. doi: 10.1186/s12974-015-0296-6.

2.

The June surprises: balls, strikes, and the fog of war.

Fried C.

J Health Polit Policy Law. 2013 Apr;38(2):225-41. doi: 10.1215/03616878-1966225. Epub 2012 Dec 21.

PMID:
23262769
3.

Evolutionary patterns of non-coding RNAs.

Bompfünewerer AF, Flamm C, Fried C, Fritzsch G, Hofacker IL, Lehmann J, Missal K, Mosig A, Müller B, Prohaska SJ, Stadler BM, Stadler PF, Tanzer A, Washietl S, Witwer C.

Theory Biosci. 2005 Apr;123(4):301-69. doi: 10.1016/j.thbio.2005.01.002.

PMID:
18202870
4.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, Asthana S, Malhotra A, Adzhubei I, Greenbaum JA, Andrews RM, Flicek P, Boyle PJ, Cao H, Carter NP, Clelland GK, Davis S, Day N, Dhami P, Dillon SC, Dorschner MO, Fiegler H, Giresi PG, Goldy J, Hawrylycz M, Haydock A, Humbert R, James KD, Johnson BE, Johnson EM, Frum TT, Rosenzweig ER, Karnani N, Lee K, Lefebvre GC, Navas PA, Neri F, Parker SC, Sabo PJ, Sandstrom R, Shafer A, Vetrie D, Weaver M, Wilcox S, Yu M, Collins FS, Dekker J, Lieb JD, Tullius TD, Crawford GE, Sunyaev S, Noble WS, Dunham I, Denoeud F, Reymond A, Kapranov P, Rozowsky J, Zheng D, Castelo R, Frankish A, Harrow J, Ghosh S, Sandelin A, Hofacker IL, Baertsch R, Keefe D, Dike S, Cheng J, Hirsch HA, Sekinger EA, Lagarde J, Abril JF, Shahab A, Flamm C, Fried C, Hackermüller J, Hertel J, Lindemeyer M, Missal K, Tanzer A, Washietl S, Korbel J, Emanuelsson O, Pedersen JS, Holroyd N, Taylor R, Swarbreck D, Matthews N, Dickson MC, Thomas DJ, Weirauch MT, Gilbert J, Drenkow J, Bell I, Zhao X, Srinivasan KG, Sung WK, Ooi HS, Chiu KP, Foissac S, Alioto T, Brent M, Pachter L, Tress ML, Valencia A, Choo SW, Choo CY, Ucla C, Manzano C, Wyss C, Cheung E, Clark TG, Brown JB, Ganesh M, Patel S, Tammana H, Chrast J, Henrichsen CN, Kai C, Kawai J, Nagalakshmi U, Wu J, Lian Z, Lian J, Newburger P, Zhang X, Bickel P, Mattick JS, Carninci P, Hayashizaki Y, Weissman S, Hubbard T, Myers RM, Rogers J, Stadler PF, Lowe TM, Wei CL, Ruan Y, Struhl K, Gerstein M, Antonarakis SE, Fu Y, Green ED, Karaöz U, Siepel A, Taylor J, Liefer LA, Wetterstrand KA, Good PJ, Feingold EA, Guyer MS, Cooper GM, Asimenos G, Dewey CN, Hou M, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Huang H, Zhang NR, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Seringhaus M, Church D, Rosenbloom K, Kent WJ, Stone EA; NISC Comparative Sequencing Program; Baylor College of Medicine Human Genome Sequencing Center; Washington University Genome Sequencing Center; Broad Institute; Children's Hospital Oakland Research Institute, Batzoglou S, Goldman N, Hardison RC, Haussler D, Miller W, Sidow A, Trinklein ND, Zhang ZD, Barrera L, Stuart R, King DC, Ameur A, Enroth S, Bieda MC, Kim J, Bhinge AA, Jiang N, Liu J, Yao F, Vega VB, Lee CW, Ng P, Shahab A, Yang A, Moqtaderi Z, Zhu Z, Xu X, Squazzo S, Oberley MJ, Inman D, Singer MA, Richmond TA, Munn KJ, Rada-Iglesias A, Wallerman O, Komorowski J, Fowler JC, Couttet P, Bruce AW, Dovey OM, Ellis PD, Langford CF, Nix DA, Euskirchen G, Hartman S, Urban AE, Kraus P, Van Calcar S, Heintzman N, Kim TH, Wang K, Qu C, Hon G, Luna R, Glass CK, Rosenfeld MG, Aldred SF, Cooper SJ, Halees A, Lin JM, Shulha HP, Zhang X, Xu M, Haidar JN, Yu Y, Ruan Y, Iyer VR, Green RD, Wadelius C, Farnham PJ, Ren B, Harte RA, Hinrichs AS, Trumbower H, Clawson H, Hillman-Jackson J, Zweig AS, Smith K, Thakkapallayil A, Barber G, Kuhn RM, Karolchik D, Armengol L, Bird CP, de Bakker PI, Kern AD, Lopez-Bigas N, Martin JD, Stranger BE, Woodroffe A, Davydov E, Dimas A, Eyras E, Hallgrímsdóttir IB, Huppert J, Zody MC, Abecasis GR, Estivill X, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Koriabine M, Nefedov M, Osoegawa K, Yoshinaga Y, Zhu B, de Jong PJ.

Nature. 2007 Jun 14;447(7146):799-816.

5.

RNAs everywhere: genome-wide annotation of structured RNAs.

Athanasius F Bompfünewerer Consortium, Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S.

J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. Review.

PMID:
17171697
6.

The expansion of the metazoan microRNA repertoire.

Hertel J, Lindemeyer M, Missal K, Fried C, Tanzer A, Flamm C, Hofacker IL, Stadler PF; Students of Bioinformatics Computer Labs 2004 and 2005.

BMC Genomics. 2006 Feb 15;7:25.

7.

Multiple sequence alignments of partially coding nucleic acid sequences.

Stocsits RR, Hofacker IL, Fried C, Stadler PF.

BMC Bioinformatics. 2005 Jun 28;6:160.

8.

Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences.

Wagner GP, Takahashi K, Lynch V, Prohaska SJ, Fried C, Stadler PF, Amemiya C.

J Mol Evol. 2005 May;60(5):665-76.

PMID:
15983874
9.

Evidence for independent Hox gene duplications in the hagfish lineage: a PCR-based gene inventory of Eptatretus stoutii.

Stadler PF, Fried C, Prohaska SJ, Bailey WJ, Misof BY, Ruddle FH, Wagner GP.

Mol Phylogenet Evol. 2004 Sep;32(3):686-94.

PMID:
15288047
10.

Divergence of conserved non-coding sequences: rate estimates and relative rate tests.

Wagner GP, Fried C, Prohaska SJ, Stadler PF.

Mol Biol Evol. 2004 Nov;21(11):2116-21. Epub 2004 Jul 28.

PMID:
15282332
11.

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF.

Mol Phylogenet Evol. 2004 May;31(2):581-604.

PMID:
15062796
12.

Exclusion of repetitive DNA elements from gnathostome Hox clusters.

Fried C, Prohaska SJ, Stadler PF.

J Exp Zool B Mol Dev Evol. 2004 Mar 15;302(2):165-73.

PMID:
15054859
13.

The shark HoxN cluster is homologous to the human HoxD cluster.

Prohaska SJ, Fried C, Amemiya CT, Ruddle FH, Wagner GP, Stadler PF.

J Mol Evol. 2004 Feb;58(2):212-7.

PMID:
15042342
14.

The footprint sorting problem.

Fried C, Hordijk W, Prohaska SJ, Stadler CR, Stadler PF.

J Chem Inf Comput Sci. 2004 Mar-Apr;44(2):332-8.

PMID:
15032508
15.

Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution.

Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT.

Genome Res. 2004 Jan;14(1):11-7.

16.
17.

Independent Hox-cluster duplications in lampreys.

Fried C, Prohaska SJ, Stadler PF.

J Exp Zool B Mol Dev Evol. 2003 Oct 15;299(1):18-25.

PMID:
14508813
18.

FOXD4a and FOXD4b, two new winged helix transcription factors, are expressed in human leukemia cell lines.

Freyaldenhoven BS, Fried C, Wielckens K.

Gene. 2002 Jul 10;294(1-2):131-140.

PMID:
12234674
19.

The medical status of methadone maintenance patients in treatment for 11-18 years.

Novick DM, Richman BL, Friedman JM, Friedman JE, Fried C, Wilson JP, Townley A, Kreek MJ.

Drug Alcohol Depend. 1993 Oct;33(3):235-45.

PMID:
8261888
20.

Overcoming denial and increasing the intention to use condoms through the induction of hypocrisy.

Aronson E, Fried C, Stone J.

Am J Public Health. 1991 Dec;81(12):1636-8.

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