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Items: 1 to 20 of 184

1.

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities.

Beaulaurier J, Luo E, Eppley JM, Uyl PD, Dai X, Burger A, Turner DJ, Pendelton M, Juul S, Harrington E, DeLong EF.

Genome Res. 2020 Mar;30(3):437-446. doi: 10.1101/gr.251686.119. Epub 2020 Feb 19.

2.

Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column.

Luo E, Eppley JM, Romano AE, Mende DR, DeLong EF.

ISME J. 2020 Feb 14. doi: 10.1038/s41396-020-0604-8. [Epub ahead of print]

PMID:
32060418
3.

Diel cycling of the cosmopolitan abundant Pelagibacter virus 37-F6: one of the most abundant viruses on earth.

Martinez-Hernandez F, Luo E, Tominaga K, Ogata H, Yoshida T, DeLong EF, Martinez-Garcia M.

Environ Microbiol Rep. 2020 Apr;12(2):214-219. doi: 10.1111/1758-2229.12825. Epub 2020 Feb 7.

PMID:
31997562
4.

Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre.

Mende DR, Boeuf D, DeLong EF.

Front Microbiol. 2019 Oct 1;10:2273. doi: 10.3389/fmicb.2019.02273. eCollection 2019.

5.

Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters.

Vislova A, Sosa OA, Eppley JM, Romano AE, DeLong EF.

Front Microbiol. 2019 Sep 24;10:2191. doi: 10.3389/fmicb.2019.02191. eCollection 2019.

6.

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators.

Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S, Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, Malmstrom RR, Mende DR, Olson DK, Sudo Y, Sudek S, Richards TA, DeLong EF, Keeling PJ, Santoro AE, Shirouzu M, Iwasaki W, Worden AZ.

Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20574-20583. doi: 10.1073/pnas.1907517116. Epub 2019 Sep 23.

7.

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean.

Wilson ST, Hawco NJ, Armbrust EV, Barone B, Björkman KM, Boysen AK, Burgos M, Burrell TJ, Casey JR, DeLong EF, Dugenne M, Dutkiewicz S, Dyhrman ST, Ferrón S, Follows MJ, Foreman RK, Funkey CP, Harke MJ, Henke BA, Hill CN, Hynes AM, Ingalls AE, Jahn O, Kelly RL, Knapp AN, Letelier RM, Ribalet F, Shimabukuro EM, Tabata RKS, Turk-Kubo KA, White AE, Zehr JP, John S, Karl DM.

Science. 2019 Sep 6;365(6457):1040-1044. doi: 10.1126/science.aax4767.

PMID:
31488692
8.

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection.

Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE.

ISME J. 2019 Nov;13(11):2817-2833. doi: 10.1038/s41396-019-0472-2. Epub 2019 Jul 18.

9.

Biological composition and microbial dynamics of sinking particulate organic matter at abyssal depths in the oligotrophic open ocean.

Boeuf D, Edwards BR, Eppley JM, Hu SK, Poff KE, Romano AE, Caron DA, Karl DM, DeLong EF.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11824-11832. doi: 10.1073/pnas.1903080116. Epub 2019 May 24.

10.

Phosphate-limited ocean regions select for bacterial populations enriched in the carbon-phosphorus lyase pathway for phosphonate degradation.

Sosa OA, Repeta DJ, DeLong EF, Ashkezari MD, Karl DM.

Environ Microbiol. 2019 Jul;21(7):2402-2414. doi: 10.1111/1462-2920.14628. Epub 2019 May 27.

11.

Thank You Ken, Joan and Dave, for 20 years of Environmental Microbiology!

DeLong EF.

Environ Microbiol. 2018 Jun;20(6):1964-1965. doi: 10.1111/1462-2920.14243. Epub 2018 Jul 22. No abstract available.

PMID:
29749685
12.

Towards a microbial universal theory of all (nearly) totality: MUTANT.

DeLong EF.

Environ Microbiol. 2018 Jun;20(6):1962-1963. doi: 10.1111/1462-2920.14242. Epub 2018 Jul 22. No abstract available.

PMID:
29749683
13.

Proteorhodopsin variability and distribution in the North Pacific Subtropical Gyre.

Olson DK, Yoshizawa S, Boeuf D, Iwasaki W, DeLong EF.

ISME J. 2018 Apr;12(4):1047-1060. doi: 10.1038/s41396-018-0074-4. Epub 2018 Feb 23.

14.

Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia.

Kumagai Y, Yoshizawa S, Nakajima Y, Watanabe M, Fukunaga T, Ogura Y, Hayashi T, Oshima K, Hattori M, Ikeuchi M, Kogure K, DeLong EF, Iwasaki W.

ISME J. 2018 May;12(5):1329-1343. doi: 10.1038/s41396-018-0058-4. Epub 2018 Feb 6.

15.

Bacterial Succession on Sinking Particles in the Ocean's Interior.

Pelve EA, Fontanez KM, DeLong EF.

Front Microbiol. 2017 Nov 24;8:2269. doi: 10.3389/fmicb.2017.02269. eCollection 2017.

16.

Bacteriophage Distributions and Temporal Variability in the Ocean's Interior.

Luo E, Aylward FO, Mende DR, DeLong EF.

mBio. 2017 Nov 28;8(6). pii: e01903-17. doi: 10.1128/mBio.01903-17.

17.

Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic Matter.

Sosa OA, Repeta DJ, Ferrón S, Bryant JA, Mende DR, Karl DM, DeLong EF.

Front Microbiol. 2017 Sep 26;8:1786. doi: 10.3389/fmicb.2017.01786. eCollection 2017.

18.

Diel cycling and long-term persistence of viruses in the ocean's euphotic zone.

Aylward FO, Boeuf D, Mende DR, Wood-Charlson EM, Vislova A, Eppley JM, Romano AE, DeLong EF.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):11446-11451. doi: 10.1073/pnas.1714821114. Epub 2017 Oct 11.

19.

Environmental drivers of a microbial genomic transition zone in the ocean's interior.

Mende DR, Bryant JA, Aylward FO, Eppley JM, Nielsen T, Karl DM, DeLong EF.

Nat Microbiol. 2017 Oct;2(10):1367-1373. doi: 10.1038/s41564-017-0008-3. Epub 2017 Aug 14.

PMID:
28808230
20.

Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

Wilson ST, Aylward FO, Ribalet F, Barone B, Casey JR, Connell PE, Eppley JM, Ferrón S, Fitzsimmons JN, Hayes CT, Romano AE, Turk-Kubo KA, Vislova A, Armbrust EV, Caron DA, Church MJ, Zehr JP, Karl DM, DeLong EF.

Nat Microbiol. 2017 Jul 31;2:17118. doi: 10.1038/nmicrobiol.2017.118.

PMID:
28758990

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