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Items: 1 to 20 of 51

1.

Making Sense of… the Microbiome in Psychiatry.

Bastiaanssen TFS, Cowan CSM, Claesson MJ, Dinan TG, Cryan JF.

Int J Neuropsychopharmacol. 2018 Aug 7. doi: 10.1093/ijnp/pyy067. [Epub ahead of print]

PMID:
30099552
2.

Social interaction-induced activation of RNA splicing in the amygdala of microbiome-deficient mice.

Stilling RM, Moloney GM, Ryan FJ, Hoban AE, Bastiaanssen TF, Shanahan F, Clarke G, Claesson MJ, Dinan TG, Cryan JF.

Elife. 2018 May 29;7. pii: e33070. doi: 10.7554/eLife.33070.

3.

Species classifier choice is a key consideration when analysing low-complexity food microbiome data.

Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD.

Microbiome. 2018 Mar 20;6(1):50. doi: 10.1186/s40168-018-0437-0.

4.

Determinants of Reduced Genetic Capacity for Butyrate Synthesis by the Gut Microbiome in Crohn's Disease and Ulcerative Colitis.

Laserna-Mendieta EJ, Clooney AG, Carretero-Gomez JF, Moran C, Sheehan D, Nolan JA, Hill C, Gahan CGM, Joyce SA, Shanahan F, Claesson MJ.

J Crohns Colitis. 2018 Jan 24;12(2):204-216. doi: 10.1093/ecco-jcc/jjx137.

PMID:
29373727
5.

Phylogenomics and comparative genomics of Lactobacillus salivarius, a mammalian gut commensal.

Harris HMB, Bourin MJB, Claesson MJ, O'Toole PW.

Microb Genom. 2017 Jun 13;3(8):e000115. doi: 10.1099/mgen.0.000115. eCollection 2017 Aug.

6.

A clinician's guide to microbiome analysis.

Claesson MJ, Clooney AG, O'Toole PW.

Nat Rev Gastroenterol Hepatol. 2017 Oct;14(10):585-595. doi: 10.1038/nrgastro.2017.97. Epub 2017 Aug 9. Review.

PMID:
28790452
7.

Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks.

Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD.

Appl Environ Microbiol. 2017 Aug 1;83(16). pii: e01144-17. doi: 10.1128/AEM.01144-17. Print 2017 Aug 15.

8.

Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir.

Walsh AM, Crispie F, Kilcawley K, O'Sullivan O, O'Sullivan MG, Claesson MJ, Cotter PD.

mSystems. 2017 Feb 21;2(1). pii: e00003-17. doi: 10.1128/mSystems.00003-17. eCollection 2017 Jan-Feb.

9.

Translating Omics to Food Microbiology.

Walsh AM, Crispie F, Claesson MJ, Cotter PD.

Annu Rev Food Sci Technol. 2017 Feb 28;8:113-134. doi: 10.1146/annurev-food-030216-025729. Epub 2017 Jan 11.

PMID:
28125344
10.

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir.

Walsh AM, Crispie F, Kilcawley K, O'Sullivan O, O'Sullivan MG, Claesson MJ, Cotter PD.

mSystems. 2016 Oct 4;1(5). pii: e00052-16. eCollection 2016 Sep-Oct. Erratum in: mSystems. 2017 Feb 21;2(1):.

11.

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.

Fouhy F, Clooney AG, Stanton C, Claesson MJ, Cotter PD.

BMC Microbiol. 2016 Jun 24;16(1):123. doi: 10.1186/s12866-016-0738-z.

12.

Regulation of prefrontal cortex myelination by the microbiota.

Hoban AE, Stilling RM, Ryan FJ, Shanahan F, Dinan TG, Claesson MJ, Clarke G, Cryan JF.

Transl Psychiatry. 2016 Apr 5;6:e774. doi: 10.1038/tp.2016.42.

13.

Tumour-associated and non-tumour-associated microbiota in colorectal cancer.

Flemer B, Lynch DB, Brown JM, Jeffery IB, Ryan FJ, Claesson MJ, O'Riordain M, Shanahan F, O'Toole PW.

Gut. 2017 Apr;66(4):633-643. doi: 10.1136/gutjnl-2015-309595. Epub 2016 Mar 18.

14.

A comparison of the gut microbiome between long-term users and non-users of proton pump inhibitors.

Clooney AG, Bernstein CN, Leslie WD, Vagianos K, Sargent M, Laserna-Mendieta EJ, Claesson MJ, Targownik LE.

Aliment Pharmacol Ther. 2016 May;43(9):974-84. doi: 10.1111/apt.13568. Epub 2016 Feb 29.

15.

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Clooney AG, Fouhy F, Sleator RD, O' Driscoll A, Stanton C, Cotter PD, Claesson MJ.

PLoS One. 2016 Feb 5;11(2):e0148028. doi: 10.1371/journal.pone.0148028. eCollection 2016.

16.

SPINGO: a rapid species-classifier for microbial amplicon sequences.

Allard G, Ryan FJ, Jeffery IB, Claesson MJ.

BMC Bioinformatics. 2015 Oct 8;16:324. doi: 10.1186/s12859-015-0747-1.

17.

Microbes & neurodevelopment--Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala.

Stilling RM, Ryan FJ, Hoban AE, Shanahan F, Clarke G, Claesson MJ, Dinan TG, Cryan JF.

Brain Behav Immun. 2015 Nov;50:209-220. doi: 10.1016/j.bbi.2015.07.009. Epub 2015 Jul 14.

PMID:
26184083
18.

BlastXtract2: Improving early exploration of (meta) genomes.

de Weerd H, van der Veen BE, Claesson MJ.

Bioinformation. 2015 Apr 30;11(4):173-5. doi: 10.6026/97320630011173. eCollection 2015.

19.

Metaphor: finding bi-directional best hit homology relationships in (meta)genomic datasets.

van der Veen BE, Harris HM, O'Toole PW, Claesson MJ.

Genomics. 2014 Dec;104(6 Pt B):459-63. doi: 10.1016/j.ygeno.2014.10.008. Epub 2014 Oct 27.

20.

Unusual genome complexity in Lactobacillus salivarius JCM1046.

Raftis EJ, Forde BM, Claesson MJ, O'Toole PW.

BMC Genomics. 2014 Sep 8;15:771. doi: 10.1186/1471-2164-15-771.

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