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Items: 1 to 20 of 26

1.

Extraction of ultrashort DNA molecules from herbarium specimens.

Gutaker RM, Reiter E, Furtwängler A, Schuenemann VJ, Burbano HA.

Biotechniques. 2017 Feb 1;62(2):76-79. doi: 10.2144/000114517.

2.

Reinforcing plant evolutionary genomics using ancient DNA.

Gutaker RM, Burbano HA.

Curr Opin Plant Biol. 2017 Feb 1;36:38-45. doi: 10.1016/j.pbi.2017.01.002. [Epub ahead of print] Review.

PMID:
28160617
3.

Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens.

Weiß CL, Schuenemann VJ, Devos J, Shirsekar G, Reiter E, Gould BA, Stinchcombe JR, Krause J, Burbano HA.

R Soc Open Sci. 2016 Jun 22;3(6):160239. doi: 10.1098/rsos.160239.

4.

Ancient gene flow from early modern humans into Eastern Neanderthals.

Kuhlwilm M, Gronau I, Hubisz MJ, de Filippo C, Prado-Martinez J, Kircher M, Fu Q, Burbano HA, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Marques-Bonet T, Andrés AM, Viola B, Pääbo S, Meyer M, Siepel A, Castellano S.

Nature. 2016 Feb 25;530(7591):429-33. doi: 10.1038/nature16544.

5.

Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data.

Weiß CL, Dannemann M, Prüfer K, Burbano HA.

Elife. 2015 Nov 3;4. pii: e10005. doi: 10.7554/eLife.10005.

6.

Rapid divergence and high diversity of miRNAs and miRNA targets in the Camelineae.

Smith LM, Burbano HA, Wang X, Fitz J, Wang G, Ural-Blimke Y, Weigel D.

Plant J. 2015 Feb;81(4):597-610. doi: 10.1111/tpj.12754.

7.

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication.

Carneiro M, Rubin CJ, Di Palma F, Albert FW, Alföldi J, Barrio AM, Pielberg G, Rafati N, Sayyab S, Turner-Maier J, Younis S, Afonso S, Aken B, Alves JM, Barrell D, Bolet G, Boucher S, Burbano HA, Campos R, Chang JL, Duranthon V, Fontanesi L, Garreau H, Heiman D, Johnson J, Mage RG, Peng Z, Queney G, Rogel-Gaillard C, Ruffier M, Searle S, Villafuerte R, Xiong A, Young S, Forsberg-Nilsson K, Good JM, Lander ES, Ferrand N, Lindblad-Toh K, Andersson L.

Science. 2014 Aug 29;345(6200):1074-9. doi: 10.1126/science.1253714.

8.

Mining herbaria for plant pathogen genomes: back to the future.

Yoshida K, Burbano HA, Krause J, Thines M, Weigel D, Kamoun S.

PLoS Pathog. 2014 Apr 24;10(4):e1004028. doi: 10.1371/journal.ppat.1004028. Review. No abstract available.

9.

Patterns of coding variation in the complete exomes of three Neandertals.

Castellano S, Parra G, Sánchez-Quinto FA, Racimo F, Kuhlwilm M, Kircher M, Sawyer S, Fu Q, Heinze A, Nickel B, Dabney J, Siebauer M, White L, Burbano HA, Renaud G, Stenzel U, Lalueza-Fox C, de la Rasilla M, Rosas A, Rudan P, Brajković D, Kucan Ž, Gušic I, Shunkov MV, Derevianko AP, Viola B, Meyer M, Kelso J, Andrés AM, Pääbo S.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6666-71. doi: 10.1073/pnas.1405138111.

10.

The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine.

Yoshida K, Schuenemann VJ, Cano LM, Pais M, Mishra B, Sharma R, Lanz C, Martin FN, Kamoun S, Krause J, Thines M, Weigel D, Burbano HA.

Elife. 2013 May 28;2:e00731. doi: 10.7554/eLife.00731. Erratum in: Elife. 2013;2:e01108.

11.

DNA analysis of an early modern human from Tianyuan Cave, China.

Fu Q, Meyer M, Gao X, Stenzel U, Burbano HA, Kelso J, Pääbo S.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2223-7. doi: 10.1073/pnas.1221359110.

12.

Comparative population genomics of the ejaculate in humans and the great apes.

Good JM, Wiebe V, Albert FW, Burbano HA, Kircher M, Green RE, Halbwax M, André C, Atencia R, Fischer A, Pääbo S.

Mol Biol Evol. 2013 Apr;30(4):964-76. doi: 10.1093/molbev/mst005.

PMID:
23329688
13.

Tissue-specific silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a.

Manavella PA, Koenig D, Rubio-Somoza I, Burbano HA, Becker C, Weigel D.

Plant Physiol. 2013 Feb;161(2):805-12. doi: 10.1104/pp.112.207068.

14.

A recent evolutionary change affects a regulatory element in the human FOXP2 gene.

Maricic T, Günther V, Georgiev O, Gehre S, Curlin M, Schreiweis C, Naumann R, Burbano HA, Meyer M, Lalueza-Fox C, de la Rasilla M, Rosas A, Gajovic S, Kelso J, Enard W, Schaffner W, Pääbo S.

Mol Biol Evol. 2013 Apr;30(4):844-52. doi: 10.1093/molbev/mss271.

15.

Transcription factors are targeted by differentially expressed miRNAs in primates.

Dannemann M, Prüfer K, Lizano E, Nickel B, Burbano HA, Kelso J.

Genome Biol Evol. 2012;4(4):552-64. doi: 10.1093/gbe/evs033.

16.

Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.

Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J.

BMC Genomics. 2012 Mar 27;13:116. doi: 10.1186/1471-2164-13-116.

17.

Analysis of human accelerated DNA regions using archaic hominin genomes.

Burbano HA, Green RE, Maricic T, Lalueza-Fox C, de la Rasilla M, Rosas A, Kelso J, Pollard KS, Lachmann M, Pääbo S.

PLoS One. 2012;7(3):e32877. doi: 10.1371/journal.pone.0032877.

18.

A draft genome of Yersinia pestis from victims of the Black Death.

Bos KI, Schuenemann VJ, Golding GB, Burbano HA, Waglechner N, Coombes BK, McPhee JB, DeWitte SN, Meyer M, Schmedes S, Wood J, Earn DJ, Herring DA, Bauer P, Poinar HN, Krause J.

Nature. 2011 Oct 12;478(7370):506-10. doi: 10.1038/nature10549. Erratum in: Nature. 2011 Dec 8;480(7376):278.

19.

Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection.

Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE, Burbano HA, Plyusnina IZ, Trut L, Andersson L, Schöneberg T, Carlborg O, Hannon GJ, Pääbo S.

Heredity (Edinb). 2011 Sep;107(3):205-14. doi: 10.1038/hdy.2011.4.

20.

Targeted investigation of the Neandertal genome by array-based sequence capture.

Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Albert FW, de la Rasilla M, Fortea J, Rosas A, Lachmann M, Hannon GJ, Pääbo S.

Science. 2010 May 7;328(5979):723-5. doi: 10.1126/science.1188046.

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