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Items: 1 to 20 of 78

1.

A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients.

Jacobs JP, Goudarzi M, Singh N, Tong M, McHardy IH, Ruegger P, Asadourian M, Moon BH, Ayson A, Borneman J, McGovern DP, Fornace AJ Jr, Braun J, Dubinsky M.

Cell Mol Gastroenterol Hepatol. 2016 Jul 2;2(6):750-766. doi: 10.1016/j.jcmgh.2016.06.004.

2.

Microbial, metabolomic, and immunologic dynamics in a relapsing genetic mouse model of colitis induced by T-synthase deficiency.

Jacobs JP, Lin L, Goudarzi M, Ruegger P, McGovern DP, Fornace AJ Jr, Borneman J, Xia L, Braun J.

Gut Microbes. 2017 Jan 2;8(1):1-16. doi: 10.1080/19490976.2016.1257469.

PMID:
27874308
3.

A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn's Disease and Human Gut Microbiome Composition.

Li D, Achkar JP, Haritunians T, Jacobs JP, Hui KY, D'Amato M, Brand S, Radford-Smith G, Halfvarson J, Niess JH, Kugathasan S, Büning C, Schumm LP, Klei L, Ananthakrishnan A, Aumais G, Baidoo L, Dubinsky M, Fiocchi C, Glas J, Milgrom R, Proctor DD, Regueiro M, Simms LA, Stempak JM, Targan SR, Törkvist L, Sharma Y, Devlin B, Borneman J, Hakonarson H, Xavier RJ, Daly M, Brant SR, Rioux JD, Silverberg MS, Cho JH, Braun J, McGovern DP, Duerr RH.

Gastroenterology. 2016 Oct;151(4):724-32. doi: 10.1053/j.gastro.2016.06.051.

PMID:
27492617
4.

Chemopreventive Metabolites Are Correlated with a Change in Intestinal Microbiota Measured in A-T Mice and Decreased Carcinogenesis.

Cheema AK, Maier I, Dowdy T, Wang Y, Singh R, Ruegger PM, Borneman J, Fornace AJ Jr, Schiestl RH.

PLoS One. 2016 Apr 13;11(4):e0151190. doi: 10.1371/journal.pone.0151190.

5.

Association of Systemic Sclerosis With a Unique Colonic Microbial Consortium.

Volkmann ER, Chang YL, Barroso N, Furst DE, Clements PJ, Gorn AH, Roth BE, Conklin JL, Getzug T, Borneman J, McGovern DP, Tong M, Jacobs JP, Braun J.

Arthritis Rheumatol. 2016 Jun;68(6):1483-92. doi: 10.1002/art.39572.

PMID:
26749064
6.

PRISE2: software for designing sequence-selective PCR primers and probes.

Huang YT, Yang JI, Chrobak M, Borneman J.

BMC Bioinformatics. 2014 Sep 25;15:317. doi: 10.1186/1471-2105-15-317.

7.

Improved resolution of bacteria by high throughput sequence analysis of the rRNA internal transcribed spacer.

Ruegger PM, Clark RT, Weger JR, Braun J, Borneman J.

J Microbiol Methods. 2014 Oct;105:82-7. doi: 10.1016/j.mimet.2014.07.001.

8.

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism.

Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ Jr, Sonnenburg JL, McGovern DP, Borneman J, Braun J.

ISME J. 2014 Nov;8(11):2193-206. doi: 10.1038/ismej.2014.64.

9.

HIV Infection is associated with compositional and functional shifts in the rectal mucosal microbiota.

McHardy IH, Li X, Tong M, Ruegger P, Jacobs J, Borneman J, Anton P, Braun J.

Microbiome. 2013 Oct 12;1(1):26. doi: 10.1186/2049-2618-1-26.

10.

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships.

McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ Jr, Borneman J, Braun J.

Microbiome. 2013 Jun 5;1(1):17. doi: 10.1186/2049-2618-1-17.

11.

Phylogeny-based classification of microbial communities.

Tanaseichuk O, Borneman J, Jiang T.

Bioinformatics. 2014 Feb 15;30(4):449-56. doi: 10.1093/bioinformatics/btt700.

PMID:
24369151
12.

A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease.

Tong M, Li X, Wegener Parfrey L, Roth B, Ippoliti A, Wei B, Borneman J, McGovern DP, Frank DN, Li E, Horvath S, Knight R, Braun J.

PLoS One. 2013 Nov 19;8(11):e80702. doi: 10.1371/journal.pone.0080702.

13.

Intestinal bacteria modify lymphoma incidence and latency by affecting systemic inflammatory state, oxidative stress, and leukocyte genotoxicity.

Yamamoto ML, Maier I, Dang AT, Berry D, Liu J, Ruegger PM, Yang JI, Soto PA, Presley LL, Reliene R, Westbrook AM, Wei B, Loy A, Chang C, Braun J, Borneman J, Schiestl RH.

Cancer Res. 2013 Jul 15;73(14):4222-32. doi: 10.1158/0008-5472.CAN-13-0022.

14.
15.

Population Dynamics of Dactylella oviparasitica and Heterodera schachtii: Toward a Decision Model for Sugar Beet Planting.

Yang JI, Benecke S, Jeske DR, Rocha FS, Smith Becker J, Timper P, Ole Becker J, Borneman J.

J Nematol. 2012 Sep;44(3):237-44.

16.

Correlations between root-associated microorganisms and peach replant disease symptoms in a California soil.

Yang JI, Ruegger PM, McKenry MV, Becker JO, Borneman J.

PLoS One. 2012;7(10):e46420. doi: 10.1371/journal.pone.0046420.

17.

Separating metagenomic short reads into genomes via clustering.

Tanaseichuk O, Borneman J, Jiang T.

Algorithms Mol Biol. 2012 Sep 26;7(1):27. doi: 10.1186/1748-7188-7-27.

18.

The role of coral-associated bacterial communities in Australian Subtropical White Syndrome of Turbinaria mesenterina.

Godwin S, Bent E, Borneman J, Pereg L.

PLoS One. 2012;7(9):e44243. doi: 10.1371/journal.pone.0044243.

19.

Improving oligonucleotide fingerprinting of rRNA genes by implementation of polony microarray technology.

Ruegger PM, Bent E, Li W, Jeske DR, Cui X, Braun J, Jiang T, Borneman J.

J Microbiol Methods. 2012 Sep;90(3):235-40. doi: 10.1016/j.mimet.2012.05.013.

20.

A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface.

Li X, LeBlanc J, Truong A, Vuthoori R, Chen SS, Lustgarten JL, Roth B, Allard J, Ippoliti A, Presley LL, Borneman J, Bigbee WL, Gopalakrishnan V, Graeber TG, Elashoff D, Braun J, Goodglick L.

PLoS One. 2011;6(11):e26542. doi: 10.1371/journal.pone.0026542.

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