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Items: 1 to 20 of 201


Discovery and characterization of tannase genes in plants: roles in hydrolysis of tannins.

Dai X, Liu Y, Zhuang J, Yao S, Liu L, Jiang X, Zhou K, Wang Y, Xie D, Bennetzen JL, Gao L, Xia T.

New Phytol. 2020 Feb 15. doi: 10.1111/nph.16425. [Epub ahead of print]


Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff.

VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP.

Nat Commun. 2020 Feb 14;11(1):884. doi: 10.1038/s41467-020-14724-z.


5Gs for crop genetic improvement.

Varshney RK, Sinha P, Singh VK, Kumar A, Zhang Q, Bennetzen JL.

Curr Opin Plant Biol. 2020 Jan 28. pii: S1369-5266(19)30119-0. doi: 10.1016/j.pbi.2019.12.004. [Epub ahead of print] Review.


Genome Sequence Analysis of Enterobacter sp. C6, Found in the Pitcher Fluids of Sarracenia rosea.

Zhang S, Chaluvadi SR, Bennetzen JL.

Microbiol Resour Announc. 2020 Jan 16;9(3). pii: e01214-19. doi: 10.1128/MRA.01214-19.


Phoenix phylogeny, and analysis of genetic variation in a diverse collection of date palm (Phoenix dactylifera) and related species.

Chaluvadi SR, Young P, Thompson K, Bahri BA, Gajera B, Narayanan S, Krueger R, Bennetzen JL.

Plant Divers. 2018 Dec 18;41(5):330-339. doi: 10.1016/j.pld.2018.11.005. eCollection 2019 Oct.


Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Sarracenia Pitcher Plant.

Zhang S, Chaluvadi SR, Bennetzen JL.

Microbiol Resour Announc. 2020 Jan 9;9(2). pii: e01216-19. doi: 10.1128/MRA.01216-19.


The bracteatus pineapple genome and domestication of clonally propagated crops.

Chen LY, VanBuren R, Paris M, Zhou H, Zhang X, Wai CM, Yan H, Chen S, Alonge M, Ramakrishnan S, Liao Z, Liu J, Lin J, Yue J, Fatima M, Lin Z, Zhang J, Huang L, Wang H, Hwa TY, Kao SM, Choi JY, Sharma A, Song J, Wang L, Yim WC, Cushman JC, Paull RE, Matsumoto T, Qin Y, Wu Q, Wang J, Yu Q, Wu J, Zhang S, Boches P, Tung CW, Wang ML, Coppens d'Eeckenbrugge G, Sanewski GM, Purugganan MD, Schatz MC, Bennetzen JL, Lexer C, Ming R.

Nat Genet. 2019 Oct;51(10):1549-1558. doi: 10.1038/s41588-019-0506-8. Epub 2019 Sep 30.


Comparative transcriptomic analysis reveals gene expression associated with cold adaptation in the tea plant Camellia sinensis.

Li Y, Wang X, Ban Q, Zhu X, Jiang C, Wei C, Bennetzen JL.

BMC Genomics. 2019 Jul 31;20(1):624. doi: 10.1186/s12864-019-5988-3.


The tea plant reference genome and improved gene annotation using long-read and paired-end sequencing data.

Xia E, Li F, Tong W, Yang H, Wang S, Zhao J, Liu C, Gao L, Tai Y, She G, Sun J, Cao H, Gao Q, Li Y, Deng W, Jiang X, Wang W, Chen Q, Zhang S, Li H, Wu J, Wang P, Li P, Shi C, Zheng F, Jian J, Huang B, Shan D, Shi M, Fang C, Yue Y, Wu Q, Ge R, Zhao H, Li D, Wei S, Han B, Jiang C, Yin Y, Xia T, Zhang Z, Zhao S, Bennetzen JL, Wei C, Wan X.

Sci Data. 2019 Jul 15;6(1):122. doi: 10.1038/s41597-019-0127-1.


Lateral transfers of large DNA fragments spread functional genes among grasses.

Dunning LT, Olofsson JK, Parisod C, Choudhury RR, Moreno-Villena JJ, Yang Y, Dionora J, Quick WP, Park M, Bennetzen JL, Besnard G, Nosil P, Osborne CP, Christin PA.

Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4416-4425. doi: 10.1073/pnas.1810031116. Epub 2019 Feb 20.


Genome sequence of Malania oleifera, a tree with great value for nervonic acid production.

Xu CQ, Liu H, Zhou SS, Zhang DX, Zhao W, Wang S, Chen F, Sun YQ, Nie S, Jia KH, Jiao SQ, Zhang RG, Yun QZ, Guan W, Wang X, Gao Q, Bennetzen JL, Maghuly F, Porth I, Van de Peer Y, Wang XR, Ma Y, Mao JF.

Gigascience. 2019 Feb 1;8(2). pii: giy164. doi: 10.1093/gigascience/giy164.


Species-Associated Differences in the Below-Ground Microbiomes of Wild and Domesticated Setaria.

Chaluvadi S, Bennetzen JL.

Front Plant Sci. 2018 Aug 21;9:1183. doi: 10.3389/fpls.2018.01183. eCollection 2018.


Birth and Death of LTR-Retrotransposons in Aegilops tauschii.

Dai X, Wang H, Zhou H, Wang L, Dvořák J, Bennetzen JL, Müller HG.

Genetics. 2018 Nov;210(3):1039-1051. doi: 10.1534/genetics.118.301198. Epub 2018 Aug 29.


Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis).

Tong W, Yu J, Hou Y, Li F, Zhou Q, Wei C, Bennetzen JL.

Planta. 2018 Dec;248(6):1417-1429. doi: 10.1007/s00425-018-2983-x. Epub 2018 Aug 20.


Analysis of retrotransposon abundance, diversity and distribution in holocentric Eleocharis (Cyperaceae) genomes.

de Souza TB, Chaluvadi SR, Johnen L, Marques A, González-Elizondo MS, Bennetzen JL, Vanzela ALL.

Ann Bot. 2018 Aug 1;122(2):279-290. doi: 10.1093/aob/mcy066.


Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana.

Wang X, Yang S, Chen Y, Zhang S, Zhao Q, Li M, Gao Y, Yang L, Bennetzen JL.

BMC Genomics. 2018 Jun 27;19(1):500. doi: 10.1186/s12864-018-4878-4.


A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia affinis Using a Chicago Library.

Hoffberg SL, Troendle NJ, Glenn TC, Mahmud O, Louha S, Chalopin D, Bennetzen JL, Mauricio R.

G3 (Bethesda). 2018 May 31;8(6):1855-1861. doi: 10.1534/g3.118.200101.


Draft genome sequence of Camellia sinensis var. sinensis provides insights into the evolution of the tea genome and tea quality.

Wei C, Yang H, Wang S, Zhao J, Liu C, Gao L, Xia E, Lu Y, Tai Y, She G, Sun J, Cao H, Tong W, Gao Q, Li Y, Deng W, Jiang X, Wang W, Chen Q, Zhang S, Li H, Wu J, Wang P, Li P, Shi C, Zheng F, Jian J, Huang B, Shan D, Shi M, Fang C, Yue Y, Li F, Li D, Wei S, Han B, Jiang C, Yin Y, Xia T, Zhang Z, Bennetzen JL, Zhao S, Wan X.

Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4151-E4158. doi: 10.1073/pnas.1719622115. Epub 2018 Apr 20.


Discovery of Lineage-Specific Genome Change in Rice Through Analysis of Resequencing Data.

Arthur RA, Bennetzen JL.

Genetics. 2018 Jun;209(2):617-626. doi: 10.1534/genetics.118.300848. Epub 2018 Apr 19.


Distinguishing friends, foes, and freeloaders in giant genomes.

Bennetzen JL, Park M.

Curr Opin Genet Dev. 2018 Apr;49:49-55. doi: 10.1016/j.gde.2018.02.013. Epub 2018 Mar 12. Review.

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