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Items: 1 to 20 of 208

1.

A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms.

Jordan VE, Walker JA, Beckstrom TO, Steely CJ, McDaniel CL, St Romain CP; Baboon Genome Analysis Consortium, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, Konkel MK, Batzer MA.

Mob DNA. 2018 Apr 5;9:13. doi: 10.1186/s13100-018-0118-3. eCollection 2018.

2.

Analysis of lineage-specific Alu subfamilies in the genome of the olive baboon, Papio anubis.

Steely CJ, Baker JN, Walker JA, Loupe CD 3rd; Baboon Genome Analysis Consortium, Batzer MA.

Mob DNA. 2018 Mar 19;9:10. doi: 10.1186/s13100-018-0115-6. eCollection 2018.

3.

Recently integrated Alu insertions in the squirrel monkey (Saimiri) lineage and application for population analyses.

Baker JN, Walker JA, Denham MW, Loupe CD 3rd, Batzer MA.

Mob DNA. 2018 Feb 12;9:9. doi: 10.1186/s13100-018-0114-7. eCollection 2018.

4.

Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons.

Steely CJ, Walker JA, Jordan VE, Beckstrom TO, McDaniel CL, St Romain CP, Bennett EC, Robichaux A, Clement BN, Raveendran M; Baboon Genome Analysis Consortium, Worley KC, Phillips-Conroy J, Jolly CJ, Rogers J, Konkel MK, Batzer MA.

Genome Biol Evol. 2017 Sep 1;9(9):2418-2427. doi: 10.1093/gbe/evx184.

5.

Evolution of Alu Subfamily Structure in the Saimiri Lineage of New World Monkeys.

Baker JN, Walker JA, Vanchiere JA, Phillippe KR, St Romain CP, Gonzalez-Quiroga P, Denham MW, Mierl JR, Konkel MK, Batzer MA.

Genome Biol Evol. 2017 Sep 1;9(9):2365-2376. doi: 10.1093/gbe/evx172.

6.

Papio Baboon Species Indicative Alu Elements.

Walker JA, Jordan VE, Steely CJ, Beckstrom TO, McDaniel CL, St Romain CP, Bennett EC, Robichaux A, Clement BN, Konkel MK; Baboon Genome Analysis Consortium, Batzer MA.

Genome Biol Evol. 2017 Jun 1;9(6):1788-1796. doi: 10.1093/gbe/evx130.

7.

Discovery of a new repeat family in the Callithrix jacchus genome.

Konkel MK, Ullmer B, Arceneaux EL, Sanampudi S, Brantley SA, Hubley R, Smit AF, Batzer MA.

Genome Res. 2016 May;26(5):649-59. doi: 10.1101/gr.199075.115. Epub 2016 Feb 25.

8.

DNA methylation variation of human-specific Alu repeats.

Bakshi A, Herke SW, Batzer MA, Kim J.

Epigenetics. 2016;11(2):163-73. doi: 10.1080/15592294.2015.1130518. Epub 2016 Feb 18.

9.

An integrated map of structural variation in 2,504 human genomes.

Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Fritz MH, Konkel MK, Malhotra A, Stütz AM, Shi X, Casale FP, Chen J, Hormozdiari F, Dayama G, Chen K, Malig M, Chaisson MJP, Walter K, Meiers S, Kashin S, Garrison E, Auton A, Lam HYK, Mu XJ, Alkan C, Antaki D, Bae T, Cerveira E, Chines P, Chong Z, Clarke L, Dal E, Ding L, Emery S, Fan X, Gujral M, Kahveci F, Kidd JM, Kong Y, Lameijer EW, McCarthy S, Flicek P, Gibbs RA, Marth G, Mason CE, Menelaou A, Muzny DM, Nelson BJ, Noor A, Parrish NF, Pendleton M, Quitadamo A, Raeder B, Schadt EE, Romanovitch M, Schlattl A, Sebra R, Shabalin AA, Untergasser A, Walker JA, Wang M, Yu F, Zhang C, Zhang J, Zheng-Bradley X, Zhou W, Zichner T, Sebat J, Batzer MA, McCarroll SA; 1000 Genomes Project Consortium, Mills RE, Gerstein MB, Bashir A, Stegle O, Devine SE, Lee C, Eichler EE, Korbel JO.

Nature. 2015 Oct 1;526(7571):75-81. doi: 10.1038/nature15394.

10.

Sequence Analysis and Characterization of Active Human Alu Subfamilies Based on the 1000 Genomes Pilot Project.

Konkel MK, Walker JA, Hotard AB, Ranck MC, Fontenot CC, Storer J, Stewart C, Marth GT; 1000 Genomes Consortium, Batzer MA.

Genome Biol Evol. 2015 Aug 29;7(9):2608-22. doi: 10.1093/gbe/evv167.

11.

Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals.

Streva VA, Jordan VE, Linker S, Hedges DJ, Batzer MA, Deininger PL.

BMC Genomics. 2015 Mar 21;16:220. doi: 10.1186/s12864-015-1374-y.

12.

Tangram: a comprehensive toolbox for mobile element insertion detection.

Wu J, Lee WP, Ward A, Walker JA, Konkel MK, Batzer MA, Marth GT.

BMC Genomics. 2014 Sep 16;15:795. doi: 10.1186/1471-2164-15-795.

13.

Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.

14.

Analysis of western lowland gorilla (Gorilla gorilla gorilla) specific Alu repeats.

McLain AT, Carman GW, Fullerton ML, Beckstrom TO, Gensler W, Meyer TJ, Faulk C, Batzer MA.

Mob DNA. 2013 Nov 22;4(1):26. doi: 10.1186/1759-8753-4-26.

15.

APOE ϵ4, rated life experiences, and affect among centenarians.

Martin P, Jazwinski SM, Davey A, Green RC, Macdonald M, Margrett JA, Siegler IC, Arnold J, Woodard JL, Johnson MA, Kim S, Dai J, Li L, Batzer MA, Poon LW, For The Georgia Centenarian Study.

Aging Ment Health. 2014 Mar;18(2):240-7. doi: 10.1080/13607863.2013.827624. Epub 2013 Sep 2.

16.

Rates and patterns of great ape retrotransposition.

Hormozdiari F, Konkel MK, Prado-Martinez J, Chiatante G, Herraez IH, Walker JA, Nelson B, Alkan C, Sudmant PH, Huddleston J, Catacchio CR, Ko A, Malig M, Baker C; Great Ape Genome Project, Marques-Bonet T, Ventura M, Batzer MA, Eichler EE.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13457-62. doi: 10.1073/pnas.1310914110. Epub 2013 Jul 24.

17.

A comparison of 100 human genes using an alu element-based instability model.

Cook GW, Konkel MK, Walker JA, Bourgeois MG, Fullerton ML, Fussell JT, Herbold HD, Batzer MA.

PLoS One. 2013 Jun 3;8(6):e65188. doi: 10.1371/journal.pone.0065188. Print 2013.

18.

Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations.

Witherspoon DJ, Zhang Y, Xing J, Watkins WS, Ha H, Batzer MA, Jorde LB.

Genome Res. 2013 Jul;23(7):1170-81. doi: 10.1101/gr.148973.112. Epub 2013 Apr 18.

19.

Genomic impact of eukaryotic transposable elements.

Arkhipova IR, Batzer MA, Brosius J, Feschotte C, Moran JV, Schmitz J, Jurka J.

Mob DNA. 2012 Nov 21;3(1):19. doi: 10.1186/1759-8753-3-19.

20.

An alu-based phylogeny of lemurs (infraorder: Lemuriformes).

McLain AT, Meyer TJ, Faulk C, Herke SW, Oldenburg JM, Bourgeois MG, Abshire CF, Roos C, Batzer MA.

PLoS One. 2012;7(8):e44035. doi: 10.1371/journal.pone.0044035. Epub 2012 Aug 28. Erratum in: PLoS One. 2012;7(8). doi:10.1371/annotation/378aaec2-599e-4cd4-8941-3a14c208b757.

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