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Corrigendum to "Evidence of viral dissemination and seasonality in a Mediterranean river catchment: implications for water pollution management" [J. Environ. Manag. 159 (2015) 58-67].

Rusiñol M, Fernandez-Cassi X, Timoneda N, Carratalà A, Abril JF, Silvera C, Figueras MJ, Gelati E, Rodó X, Kay D, Wyn-Jones P, Bofill-Mas S, Girones R.

J Environ Manage. 2018 Oct 1;223:1100. doi: 10.1016/j.jenvman.2018.05.047. Epub 2018 May 26. No abstract available.


PlanNET: homology-based predicted interactome for multiple planarian transcriptomes.

Castillo-Lara S, Abril JF.

Bioinformatics. 2018 Mar 15;34(6):1016-1023. doi: 10.1093/bioinformatics/btx738.


Metagenomics for the study of viruses in urban sewage as a tool for public health surveillance.

Fernandez-Cassi X, Timoneda N, Martínez-Puchol S, Rusiñol M, Rodriguez-Manzano J, Figuerola N, Bofill-Mas S, Abril JF, Girones R.

Sci Total Environ. 2018 Mar 15;618:870-880. doi: 10.1016/j.scitotenv.2017.08.249. Epub 2017 Nov 4.


Identification of sapovirus GV.2, astrovirus VA3 and novel anelloviruses in serum from patients with acute hepatitis of unknown aetiology.

Gonzales-Gustavson E, Timoneda N, Fernandez-Cassi X, Caballero A, Abril JF, Buti M, Rodriguez-Frias F, Girones R.

PLoS One. 2017 Oct 5;12(10):e0185911. doi: 10.1371/journal.pone.0185911. eCollection 2017.


SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling.

Boloc D, Rodríguez N, Gassó P, Abril JF, Bernardo M, Lafuente A, Mas S.

Bioinformatics. 2017 Sep 14. doi: 10.1093/bioinformatics/btx570. [Epub ahead of print]


A metagenomic assessment of viral contamination on fresh parsley plants irrigated with fecally tainted river water.

Fernandez-Cassi X, Timoneda N, Gonzales-Gustavson E, Abril JF, Bofill-Mas S, Girones R.

Int J Food Microbiol. 2017 Sep 18;257:80-90. doi: 10.1016/j.ijfoodmicro.2017.06.001.


GGPS1 Mutation and Atypical Femoral Fractures with Bisphosphonates.

Roca-Ayats N, Balcells S, Garcia-Giralt N, Falcó-Mascaró M, Martínez-Gil N, Abril JF, Urreizti R, Dopazo J, Quesada-Gómez JM, Nogués X, Mellibovsky L, Prieto-Alhambra D, Dunford JE, Javaid MK, Russell RG, Grinberg D, Díez-Pérez A.

N Engl J Med. 2017 May 4;376(18):1794-1795. doi: 10.1056/NEJMc1612804. No abstract available.


Evaluation of Methods for the Concentration and Extraction of Viruses from Sewage in the Context of Metagenomic Sequencing.

Hjelmsø MH, Hellmér M, Fernandez-Cassi X, Timoneda N, Lukjancenko O, Seidel M, Elsässer D, Aarestrup FM, Löfström C, Bofill-Mas S, Abril JF, Girones R, Schultz AC.

PLoS One. 2017 Jan 18;12(1):e0170199. doi: 10.1371/journal.pone.0170199. eCollection 2017.


The coelomic epithelium transcriptome from a clonal sea star, Coscinasterias muricata.

Gabre JL, Martinez P, Nilsson Sköld H, Ortega-Martinez O, Abril JF.

Mar Genomics. 2015 Dec;24 Pt 3:245-8. doi: 10.1016/j.margen.2015.07.010. Epub 2015 Aug 28.


Distilling a Visual Network of Retinitis Pigmentosa Gene-Protein Interactions to Uncover New Disease Candidates.

Boloc D, Castillo-Lara S, Marfany G, Gonzàlez-Duarte R, Abril JF.

PLoS One. 2015 Aug 12;10(8):e0135307. doi: 10.1371/journal.pone.0135307. eCollection 2015.


Evidence of viral dissemination and seasonality in a Mediterranean river catchment: Implications for water pollution management.

Rusiñol M, Fernandez-Cassi X, Timoneda N, Carratalà A, Abril JF, Silvera C, Figueras MJ, Gelati E, Rodó X, Kay D, Wyn-Jones P, Bofill-Mas S, Girones R.

J Environ Manage. 2015 Aug 15;159:58-67. doi: 10.1016/j.jenvman.2015.05.019. Epub 2015 Jun 2. Erratum in: J Environ Manage. 2018 May 26;:.


Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea.

Rodríguez-Esteban G, González-Sastre A, Rojo-Laguna JI, Saló E, Abril JF.

BMC Genomics. 2015 May 8;16:361. doi: 10.1186/s12864-015-1533-1.


The nervous system of Xenacoelomorpha: a genomic perspective.

Perea-Atienza E, Gavilán B, Chiodin M, Abril JF, Hoff KJ, Poustka AJ, Martinez P.

J Exp Biol. 2015 Feb 15;218(Pt 4):618-28. doi: 10.1242/jeb.110379.


Assessment of transcript reconstruction methods for RNA-seq.

Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium, Hubbard TJ, Guigó R, Harrow J, Bertone P.

Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3.


Planarians as a model to assess in vivo the role of matrix metalloproteinase genes during homeostasis and regeneration.

Isolani ME, Abril JF, Saló E, Deri P, Bianucci AM, Batistoni R.

PLoS One. 2013;8(2):e55649. doi: 10.1371/journal.pone.0055649. Epub 2013 Feb 6.


High transcriptional complexity of the retinitis pigmentosa CERKL gene in human and mouse.

Garanto A, Riera M, Pomares E, Permanyer J, de Castro-Miró M, Sava F, Abril JF, Marfany G, Gonzàlez-Duarte R.

Invest Ophthalmol Vis Sci. 2011 Jul 13;52(8):5202-14. doi: 10.1167/iovs.10-7101.


A proteomics approach to decipher the molecular nature of planarian stem cells.

Fernández-Taboada E, Rodríguez-Esteban G, Saló E, Abril JF.

BMC Genomics. 2011 Feb 28;12:133. doi: 10.1186/1471-2164-12-133.


Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea.

Abril JF, Cebrià F, Rodríguez-Esteban G, Horn T, Fraguas S, Calvo B, Bartscherer K, Saló E.

BMC Genomics. 2010 Dec 31;11:731. doi: 10.1186/1471-2164-11-731.


Complex selection on 5' splice sites in intron-rich organisms.

Irimia M, Roy SW, Neafsey DE, Abril JF, Garcia-Fernandez J, Koonin EV.

Genome Res. 2009 Nov;19(11):2021-7. doi: 10.1101/gr.089276.108. Epub 2009 Sep 10.


Computational gene annotation in new genome assemblies using GeneID.

Blanco E, Abril JF.

Methods Mol Biol. 2009;537:243-61. doi: 10.1007/978-1-59745-251-9_12.


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