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Items: 1 to 20 of 51

1.

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.

Yang JH, Li JH, Jiang S, Zhou H, Qu LH.

Nucleic Acids Res. 2013 Jan;41(Database issue):D177-87. doi: 10.1093/nar/gks1060. Epub 2012 Nov 17.

2.

Macro lncRNAs: a new layer of cis-regulatory information in the mammalian genome.

Guenzl PM, Barlow DP.

RNA Biol. 2012 Jun;9(6):731-41. doi: 10.4161/rna.19985. Epub 2012 May 23. Review.

PMID:
22617879
3.

Long non-coding RNAs: a new frontier in the study of human diseases.

Shi X, Sun M, Liu H, Yao Y, Song Y.

Cancer Lett. 2013 Oct 10;339(2):159-66. doi: 10.1016/j.canlet.2013.06.013. Epub 2013 Jun 18. Review.

PMID:
23791884
4.

Predicting long non-coding RNAs using RNA sequencing.

Ilott NE, Ponting CP.

Methods. 2013 Sep 1;63(1):50-9. doi: 10.1016/j.ymeth.2013.03.019. Epub 2013 Mar 27. Review.

PMID:
23541739
5.

ChIP-Seq and the complexity of bacterial transcriptional regulation.

Galagan J, Lyubetskaya A, Gomes A.

Curr Top Microbiol Immunol. 2013;363:43-68. doi: 10.1007/82_2012_257. Review.

PMID:
22983621
6.

Rise of the RNA machines: exploring the structure of long non-coding RNAs.

Novikova IV, Hennelly SP, Tung CS, Sanbonmatsu KY.

J Mol Biol. 2013 Oct 9;425(19):3731-46. doi: 10.1016/j.jmb.2013.02.030. Epub 2013 Mar 4. Review.

PMID:
23467124
7.

Function of lncRNAs and approaches to lncRNA-protein interactions.

Zhu J, Fu H, Wu Y, Zheng X.

Sci China Life Sci. 2013 Oct;56(10):876-85. doi: 10.1007/s11427-013-4553-6. Epub 2013 Oct 5. Review.

PMID:
24091684
8.

Genome-wide transcription factor binding: beyond direct target regulation.

MacQuarrie KL, Fong AP, Morse RH, Tapscott SJ.

Trends Genet. 2011 Apr;27(4):141-8. doi: 10.1016/j.tig.2011.01.001. Epub 2011 Feb 4. Review.

9.

The long non-coding RNAs, a new cancer diagnostic and therapeutic gold mine.

Qi P, Du X.

Mod Pathol. 2013 Feb;26(2):155-65. doi: 10.1038/modpathol.2012.160. Epub 2012 Sep 21. Review.

10.

A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.

Tran NT, Huang CH.

Biol Direct. 2014 Feb 20;9:4. doi: 10.1186/1745-6150-9-4. Review.

11.

Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.

Wade JT.

Adv Exp Med Biol. 2015;883:119-34. doi: 10.1007/978-3-319-23603-2_7. Review.

PMID:
26621465
12.

Long Noncoding RNAs: Insights from Biological Features and Functions to Diseases.

Li X, Wu Z, Fu X, Han W.

Med Res Rev. 2013 May;33(3):517-53. doi: 10.1002/med.21254. Epub 2012 Feb 8. Review.

PMID:
22318902
13.

Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis.

Da Sacco L, Baldassarre A, Masotti A.

Int J Mol Sci. 2012;13(1):97-114. doi: 10.3390/ijms13010097. Epub 2011 Dec 23. Review.

14.

Revolution of nephrology research by deep sequencing: ChIP-seq and RNA-seq.

Mimura I, Kanki Y, Kodama T, Nangaku M.

Kidney Int. 2014 Jan;85(1):31-8. doi: 10.1038/ki.2013.321. Epub 2013 Aug 28. Review.

PMID:
23986147
15.

Transcription factors: specific DNA binding and specific gene regulation.

Todeschini AL, Georges A, Veitia RA.

Trends Genet. 2014 Jun;30(6):211-9. doi: 10.1016/j.tig.2014.04.002. Epub 2014 Apr 26. Review.

PMID:
24774859
16.

Genome-wide analysis of protein-DNA interactions.

Kim TH, Ren B.

Annu Rev Genomics Hum Genet. 2006;7:81-102. Review.

PMID:
16722805
17.

Long non-coding RNAs involved in cancer development and cell fate determination.

Kitagawa M, Kotake Y, Ohhata T.

Curr Drug Targets. 2012 Dec;13(13):1616-21. Review.

PMID:
22974399
18.

Direct transcriptional regulation by nuclear microRNAs.

Salmanidis M, Pillman K, Goodall G, Bracken C.

Int J Biochem Cell Biol. 2014 Sep;54:304-11. doi: 10.1016/j.biocel.2014.03.010. Epub 2014 Mar 25. Review.

PMID:
24680896
19.

Long non-coding RNA-guided regulation in organisms.

Qi W, Song X, Li L.

Sci China Life Sci. 2013 Oct;56(10):891-6. doi: 10.1007/s11427-013-4558-1. Epub 2013 Oct 5. Review.

PMID:
24091686
20.

Deciphering transcriptional control mechanisms in hematopoiesis:the impact of high-throughput sequencing technologies.

Wilson NK, Tijssen MR, Gƶttgens B.

Exp Hematol. 2011 Oct;39(10):961-8. doi: 10.1016/j.exphem.2011.07.005. Epub 2011 Jul 23. Review.

PMID:
21781948

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