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Items: 9

1.

Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.

Wood DE, Lin H, Levy-Moonshine A, Swaminathan R, Chang YC, Anton BP, Osmani L, Steffen M, Kasif S, Salzberg SL.

Biol Direct. 2012 Oct 30;7:37. doi: 10.1186/1745-6150-7-37.

2.

COMBREX: COMputational BRidge to EXperiments.

Roberts RJ.

Biochem Soc Trans. 2011 Apr;39(2):581-3. doi: 10.1042/BST0390581. Review.

3.

A brief review of software tools for pangenomics.

Xiao J, Zhang Z, Wu J, Yu J.

Genomics Proteomics Bioinformatics. 2015 Feb;13(1):73-6. doi: 10.1016/j.gpb.2015.01.007. Epub 2015 Feb 23. Review.

4.

Using comparative genome analysis to identify problems in annotated microbial genomes.

Poptsova MS, Gogarten JP.

Microbiology. 2010 Jul;156(Pt 7):1909-17. doi: 10.1099/mic.0.033811-0. Epub 2010 Apr 29. Review.

PMID:
20430813
5.

In Silico Functional Annotation of Genomic Variation.

Butkiewicz M, Bush WS.

Curr Protoc Hum Genet. 2016 Jan 1;88:Unit 6.15. doi: 10.1002/0471142905.hg0615s88. Review.

6.

Bioinformatics: use in bacterial vaccine discovery.

Zagursky RJ, Russell D.

Biotechniques. 2001 Sep;31(3):636, 638, 640, passim. Review.

PMID:
11570507
7.

Small open reading frames: current prediction techniques and future prospect.

Cheng H, Chan WS, Li Z, Wang D, Liu S, Zhou Y.

Curr Protein Pept Sci. 2011 Sep;12(6):503-7. Review.

8.

Updating and curating metabolic pathways of TB.

Slayden RA, Jackson M, Zucker J, Ramirez MV, Dawson CC, Crew R, Sampson NS, Thomas ST, Jamshidi N, Sisk P, Caspi R, Crick DC, McNeil MR, Pavelka MS, Niederweis M, Siroy A, Dona V, McFadden J, Boshoff H, Lew JM.

Tuberculosis (Edinb). 2013 Jan;93(1):47-59. doi: 10.1016/j.tube.2012.11.001. Epub 2013 Feb 1. Review.

9.

Determination of the core of a minimal bacterial gene set.

Gil R, Silva FJ, Peretó J, Moya A.

Microbiol Mol Biol Rev. 2004 Sep;68(3):518-37, table of contents. Review.

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