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Items: 1 to 20 of 22

1.

The application of information theory to biochemical signaling systems.

Rhee A, Cheong R, Levchenko A.

Phys Biol. 2012 Aug;9(4):045011. doi: 10.1088/1478-3975/9/4/045011. Epub 2012 Aug 7.

2.

Information theory and the ethylene genetic network.

González-García JS, Díaz J.

Plant Signal Behav. 2011 Oct;6(10):1483-98. doi: 10.4161/psb.6.10.16424. Epub 2011 Oct 1. Review.

3.

Information theory and signal transduction systems: from molecular information processing to network inference.

Mc Mahon SS, Sim A, Filippi S, Johnson R, Liepe J, Smith D, Stumpf MP.

Semin Cell Dev Biol. 2014 Nov;35:98-108. doi: 10.1016/j.semcdb.2014.06.011. Epub 2014 Jun 19. Review.

PMID:
24953199
4.

Analysis of cellular signal transduction from an information theoretic approach.

Uda S, Kuroda S.

Semin Cell Dev Biol. 2016 Mar;51:24-31. doi: 10.1016/j.semcdb.2015.12.011. Epub 2015 Dec 19. Review.

PMID:
26710655
5.

Information theory in systems biology. Part II: protein-protein interaction and signaling networks.

Mousavian Z, Díaz J, Masoudi-Nejad A.

Semin Cell Dev Biol. 2016 Mar;51:14-23. doi: 10.1016/j.semcdb.2015.12.006. Epub 2015 Dec 12. Review.

PMID:
26691180
6.

Information theory based approaches to cellular signaling.

Waltermann C, Klipp E.

Biochim Biophys Acta. 2011 Oct;1810(10):924-32. doi: 10.1016/j.bbagen.2011.07.009. Epub 2011 Jul 23. Review.

PMID:
21798319
7.

Methodologies for the modeling and simulation of biochemical networks, illustrated for signal transduction pathways: a primer.

ElKalaawy N, Wassal A.

Biosystems. 2015 Mar;129:1-18. doi: 10.1016/j.biosystems.2015.01.008. Epub 2015 Jan 28. Review.

PMID:
25637875
8.

Methods of information theory and algorithmic complexity for network biology.

Zenil H, Kiani NA, Tegnér J.

Semin Cell Dev Biol. 2016 Mar;51:32-43. doi: 10.1016/j.semcdb.2016.01.011. Epub 2016 Jan 21. Review.

PMID:
26802516
9.

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.

van Riel NA.

Brief Bioinform. 2006 Dec;7(4):364-74. Epub 2006 Nov 14. Review.

PMID:
17107967
10.

Can regulatory peptides be regarded as words of a biological language.

Mayer EA, Baldi JP.

Am J Physiol. 1991 Aug;261(2 Pt 1):G171-84. Review.

PMID:
1872391
11.

Mathematical and computational techniques to deduce complex biochemical reaction mechanisms.

Crampin EJ, Schnell S, McSharry PE.

Prog Biophys Mol Biol. 2004 Sep;86(1):77-112. Review.

PMID:
15261526
12.

Numeric simulation of plant signaling networks.

Genoud T, Trevino Santa Cruz MB, Métraux JP.

Plant Physiol. 2001 Aug;126(4):1430-7. Review.

13.

Understanding complex signaling networks through models and metaphors.

Bhalla US.

Prog Biophys Mol Biol. 2003 Jan;81(1):45-65. Review.

PMID:
12475569
14.

Information theory in systems biology. Part I: Gene regulatory and metabolic networks.

Mousavian Z, Kavousi K, Masoudi-Nejad A.

Semin Cell Dev Biol. 2016 Mar;51:3-13. doi: 10.1016/j.semcdb.2015.12.007. Epub 2015 Dec 14. Review.

PMID:
26701126
15.

A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.

Breitling R, Gilbert D, Heiner M, Orton R.

Brief Bioinform. 2008 Sep;9(5):404-21. doi: 10.1093/bib/bbn026. Epub 2008 Jun 23. Review.

PMID:
18573813
16.

Boolean network models of cellular regulation: prospects and limitations.

Bornholdt S.

J R Soc Interface. 2008 Aug 6;5 Suppl 1:S85-94. doi: 10.1098/rsif.2008.0132.focus. Review.

17.

Systems analyses characterize integrated functions of biochemical networks.

Gianchandani EP, Brautigan DL, Papin JA.

Trends Biochem Sci. 2006 May;31(5):284-91. Epub 2006 Apr 17. Review.

PMID:
16616498
18.

Information transmission in genetic regulatory networks: a review.

Tkačik G, Walczak AM.

J Phys Condens Matter. 2011 Apr 20;23(15):153102. doi: 10.1088/0953-8984/23/15/153102. Epub 2011 Apr 1. Review.

PMID:
21460423
19.

What do we mean by biological complexity?

Ricard J.

C R Biol. 2003 Feb;326(2):133-40. Review.

PMID:
12754932
20.

Signaling networks: information flow, computation, and decision making.

Azeloglu EU, Iyengar R.

Cold Spring Harb Perspect Biol. 2015 Apr 1;7(4):a005934. doi: 10.1101/cshperspect.a005934. Review.

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