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Items: 9

1.

AGORA: Assembly Guided by Optical Restriction Alignment.

Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, Schwartz DC, Pop M.

BMC Bioinformatics. 2012 Aug 2;13:189. doi: 10.1186/1471-2105-13-189.

2.

Using optical mapping data for the improvement of vertebrate genome assemblies.

Howe K, Wood JM.

Gigascience. 2015 Mar 18;4:10. doi: 10.1186/s13742-015-0052-y. eCollection 2015. Review.

3.

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

Li Z, Chen Y, Mu D, Yuan J, Shi Y, Zhang H, Gan J, Li N, Hu X, Liu B, Yang B, Fan W.

Brief Funct Genomics. 2012 Jan;11(1):25-37. doi: 10.1093/bfgp/elr035. Epub 2011 Dec 19. Review.

PMID:
22184334
4.

Computational methods for optical mapping.

Mendelowitz L, Pop M.

Gigascience. 2014 Dec 30;3(1):33. doi: 10.1186/2047-217X-3-33. eCollection 2014. Review.

5.

Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.

Fierst JL.

Front Genet. 2015 Jun 19;6:220. doi: 10.3389/fgene.2015.00220. eCollection 2015. Review.

6.

Image processing for optical mapping.

Ravindran P, Gupta A.

Gigascience. 2015 Nov 26;4:57. doi: 10.1186/s13742-015-0096-z. eCollection 2015. Review.

7.

Improvements in Genomic Technologies: Application to Crop Genomics.

Yuan Y, Bayer PE, Batley J, Edwards D.

Trends Biotechnol. 2017 Jun;35(6):547-558. doi: 10.1016/j.tibtech.2017.02.009. Epub 2017 Mar 9. Review.

PMID:
28284542
8.

The impact of third generation genomic technologies on plant genome assembly.

Jiao WB, Schneeberger K.

Curr Opin Plant Biol. 2017 Apr;36:64-70. doi: 10.1016/j.pbi.2017.02.002. Epub 2017 Feb 21. Review.

9.

Optical mapping approaches to molecular genomics.

Schwartz DC, Samad A.

Curr Opin Biotechnol. 1997 Feb;8(1):70-4. Review.

PMID:
9013651

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