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Items: 20

1.

Microbial 16S rRNA Ion Tag and community metagenome sequencing using the Ion Torrent (PGM) Platform.

Whiteley AS, Jenkins S, Waite I, Kresoje N, Payne H, Mullan B, Allcock R, O'Donnell A.

J Microbiol Methods. 2012 Oct;91(1):80-8. doi: 10.1016/j.mimet.2012.07.008. Epub 2012 Jul 29.

PMID:
22849830
2.

High throughput sequencing methods for microbiome profiling: application to food animal systems.

Highlander SK.

Anim Health Res Rev. 2012 Jun;13(1):40-53. doi: 10.1017/S1466252312000126. Review.

PMID:
22853944
3.

Review and re-analysis of domain-specific 16S primers.

Baker GC, Smith JJ, Cowan DA.

J Microbiol Methods. 2003 Dec;55(3):541-55. Review.

PMID:
14607398
4.

Computational methods for the analysis of tag sequences in metagenomics studies.

Chang Q, Luan Y, Chen T, Fuhrman JA, Sun F.

Front Biosci (Schol Ed). 2012 Jun 1;4:1333-43. Review.

PMID:
22652875
5.

Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea.

Chun J, Rainey FA.

Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):316-24. doi: 10.1099/ijs.0.054171-0. Review.

PMID:
24505069
6.

Molecular tools for deciphering the microbial community structure and diversity in rumen ecosystem.

Sirohi SK, Singh N, Dagar SS, Puniya AK.

Appl Microbiol Biotechnol. 2012 Sep;95(5):1135-54. doi: 10.1007/s00253-012-4262-2. Epub 2012 Jul 12. Review.

PMID:
22782251
7.

The ecological coherence of high bacterial taxonomic ranks.

Philippot L, Andersson SG, Battin TJ, Prosser JI, Schimel JP, Whitman WB, Hallin S.

Nat Rev Microbiol. 2010 Jul;8(7):523-9. doi: 10.1038/nrmicro2367. Review.

PMID:
20531276
8.

Metagenomics: microbial diversity through a scratched lens.

Temperton B, Giovannoni SJ.

Curr Opin Microbiol. 2012 Oct;15(5):605-12. doi: 10.1016/j.mib.2012.07.001. Epub 2012 Jul 23. Review.

PMID:
22831844
9.

High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved.

Turaev D, Rattei T.

Curr Opin Biotechnol. 2016 Jun;39:174-81. doi: 10.1016/j.copbio.2016.04.011. Epub 2016 Apr 23. Review.

PMID:
27115497
10.

Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing.

Nakamura S, Nakaya T, Iida T.

Exp Biol Med (Maywood). 2011 Aug;236(8):968-71. doi: 10.1258/ebm.2011.010378. Epub 2011 Jul 7. Review.

PMID:
21737580
11.

Microbial metagenomics: beyond the genome.

Gilbert JA, Dupont CL.

Ann Rev Mar Sci. 2011;3:347-71. Review.

PMID:
21329209
12.

Progress in ion torrent semiconductor chip based sequencing.

Merriman B; Ion Torrent R&D Team, Rothberg JM.

Electrophoresis. 2012 Dec;33(23):3397-417. doi: 10.1002/elps.201200424. Review. Erratum in: Electrophoresis. 2013 Feb;34(4):619.

PMID:
23208921
13.

The changing landscape of microbial biodiversity exploration and its implications for systematics.

Hedlund BP, Dodsworth JA, Staley JT.

Syst Appl Microbiol. 2015 Jun;38(4):231-6. doi: 10.1016/j.syapm.2015.03.003. Epub 2015 Apr 2. Review.

PMID:
25921438
14.

Survey of (Meta)genomic Approaches for Understanding Microbial Community Dynamics.

Sharma A, Lal R.

Indian J Microbiol. 2017 Mar;57(1):23-38. doi: 10.1007/s12088-016-0629-x. Epub 2016 Nov 11. Review.

PMID:
28148977
15.

Perspective for Aquaponic Systems: "Omic" Technologies for Microbial Community Analysis.

Munguia-Fragozo P, Alatorre-Jacome O, Rico-Garcia E, Torres-Pacheco I, Cruz-Hernandez A, Ocampo-Velazquez RV, Garcia-Trejo JF, Guevara-Gonzalez RG.

Biomed Res Int. 2015;2015:480386. doi: 10.1155/2015/480386. Epub 2015 Oct 5. Review.

16.

From Woese to Wired: the unexpected payoffs of basic research.

Reid A.

RNA Biol. 2014;11(3):205-6. doi: 10.4161/rna.27701. Epub 2014 Jan 17. Review.

17.

Building on basic metagenomics with complementary technologies.

Warnecke F, Hugenholtz P.

Genome Biol. 2007;8(12):231. doi: 10.1186/gb-2007-8-12-231. Review.

18.

Microbial interactions: from networks to models.

Faust K, Raes J.

Nat Rev Microbiol. 2012 Jul 16;10(8):538-50. doi: 10.1038/nrmicro2832. Review.

PMID:
22796884
19.

Modeling microbial community structure and functional diversity across time and space.

Larsen PE, Gibbons SM, Gilbert JA.

FEMS Microbiol Lett. 2012 Jul;332(2):91-8. doi: 10.1111/j.1574-6968.2012.02588.x. Epub 2012 May 28. Review.

20.

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes.

Bálint M, Bahram M, Eren AM, Faust K, Fuhrman JA, Lindahl B, O'Hara RB, Öpik M, Sogin ML, Unterseher M, Tedersoo L.

FEMS Microbiol Rev. 2016 Sep;40(5):686-700. doi: 10.1093/femsre/fuw017. Epub 2016 Jun 29. Review.

PMID:
27358393

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