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Items: 10

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1.

Watching DNA polymerase η make a phosphodiester bond.

Nakamura T, Zhao Y, Yamagata Y, Hua YJ, Yang W.

Nature. 2012 Jul 11;487(7406):196-201. doi: 10.1038/nature11181.

2.

Mechanism of the nucleotidyl-transfer reaction in DNA polymerase revealed by time-resolved protein crystallography.

Nakamura T, Zhao Y, Yamagata Y, Hua YJ, Yang W.

Biophysics (Nagoya-shi). 2013 Apr 20;9:31-6. doi: 10.2142/biophysics.9.31. eCollection 2013. Review.

3.

Catalytic metal ions and enzymatic processing of DNA and RNA.

Palermo G, Cavalli A, Klein ML, Alfonso-Prieto M, Dal Peraro M, De Vivo M.

Acc Chem Res. 2015 Feb 17;48(2):220-8. doi: 10.1021/ar500314j. Epub 2015 Jan 15. Review.

PMID:
25590654
4.

The mechanism of action of T7 DNA polymerase.

Doublié S, Ellenberger T.

Curr Opin Struct Biol. 1998 Dec;8(6):704-12. Review.

PMID:
9914251
5.

An overview of Y-Family DNA polymerases and a case study of human DNA polymerase η.

Yang W.

Biochemistry. 2014 May 6;53(17):2793-803. doi: 10.1021/bi500019s. Epub 2014 Apr 23. Review.

6.

Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity.

Yang W, Lee JY, Nowotny M.

Mol Cell. 2006 Apr 7;22(1):5-13. Review.

7.

Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes.

Brautigam CA, Steitz TA.

Curr Opin Struct Biol. 1998 Feb;8(1):54-63. Review.

PMID:
9519297
8.

Getting a grip: polymerases and their substrate complexes.

Jäger J, Pata JD.

Curr Opin Struct Biol. 1999 Feb;9(1):21-8. Review.

PMID:
10047577
9.

Cations as hydrogen bond donors: a view of electrostatic interactions in DNA.

Subirana JA, Soler-Lopez M.

Annu Rev Biophys Biomol Struct. 2003;32:27-45. Epub 2003 Feb 14. Review.

PMID:
12598364
10.

A new paradigm of DNA synthesis: three-metal-ion catalysis.

Yang W, Weng PJ, Gao Y.

Cell Biosci. 2016 Sep 6;6(1):51. doi: 10.1186/s13578-016-0118-2. eCollection 2016. Review. Erratum in: Cell Biosci. 2017 Jun 20;7:32.

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