Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 74

1.

A map of the cis-regulatory sequences in the mouse genome.

Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B.

Nature. 2012 Aug 2;488(7409):116-20. doi: 10.1038/nature11243.

2.

Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence.

Wittkopp PJ, Kalay G.

Nat Rev Genet. 2011 Dec 6;13(1):59-69. doi: 10.1038/nrg3095. Review.

PMID:
22143240
3.

Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution.

Sakabe NJ, Nobrega MA.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130022. doi: 10.1098/rstb.2013.0022. Print 2013 Dec 19. Review.

4.

Evolution of cis-regulatory sequence and function in Diptera.

Wittkopp PJ.

Heredity (Edinb). 2006 Sep;97(3):139-47. Epub 2006 Jul 19. Review.

5.

Dissecting the regulatory switches of development: lessons from enhancer evolution in Drosophila.

Borok MJ, Tran DA, Ho MC, Drewell RA.

Development. 2010 Jan;137(1):5-13. doi: 10.1242/dev.036160. Review.

6.
7.

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

Meireles-Filho AC, Stark A.

Curr Opin Genet Dev. 2009 Dec;19(6):565-70. doi: 10.1016/j.gde.2009.10.006. Epub 2009 Nov 11. Review.

PMID:
19913403
8.

Identifying transcriptional cis-regulatory modules in animal genomes.

Suryamohan K, Halfon MS.

Wiley Interdiscip Rev Dev Biol. 2015 Mar-Apr;4(2):59-84. doi: 10.1002/wdev.168. Epub 2014 Dec 29. Review.

9.

Deciphering the genome's regulatory code: the many languages of DNA.

Rister J, Desplan C.

Bioessays. 2010 May;32(5):381-4. doi: 10.1002/bies.200900197. Review.

10.

Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis.

Loots GG.

Adv Genet. 2008;61:269-93. doi: 10.1016/S0065-2660(07)00010-7. Review.

11.

Understanding how cis-regulatory function is encoded in DNA sequence using massively parallel reporter assays and designed sequences.

White MA.

Genomics. 2015 Sep;106(3):165-70. doi: 10.1016/j.ygeno.2015.06.003. Epub 2015 Jun 10. Review.

12.

Topology of mammalian developmental enhancers and their regulatory landscapes.

de Laat W, Duboule D.

Nature. 2013 Oct 24;502(7472):499-506. doi: 10.1038/nature12753. Review.

PMID:
24153303
13.

Spatial organization of gene expression: the active chromatin hub.

de Laat W, Grosveld F.

Chromosome Res. 2003;11(5):447-59. Review.

PMID:
12971721
14.

Tempo and mode in evolution of transcriptional regulation.

Gordon KL, Ruvinsky I.

PLoS Genet. 2012 Jan;8(1):e1002432. doi: 10.1371/journal.pgen.1002432. Epub 2012 Jan 19. Review.

15.

Variation in vertebrate cis-regulatory elements in evolution and disease.

Douglas AT, Hill RD.

Transcription. 2014;5(3):e28848. doi: 10.4161/trns.28848. Review.

16.

Enhancer biology and enhanceropathies.

Smith E, Shilatifard A.

Nat Struct Mol Biol. 2014 Mar;21(3):210-9. doi: 10.1038/nsmb.2784. Review.

PMID:
24599251
17.

From remote enhancers to gene regulation: charting the genome's regulatory landscapes.

Symmons O, Spitz F.

Philos Trans R Soc Lond B Biol Sci. 2013 May 6;368(1620):20120358. doi: 10.1098/rstb.2012.0358. Print 2013. Review.

18.

Capturing the regulatory interactions of eukaryote genomes.

Goode DK, Elgar G.

Brief Funct Genomics. 2013 Mar;12(2):142-60. doi: 10.1093/bfgp/els041. Epub 2012 Oct 30. Review.

PMID:
23117864
19.

Role of non-coding RNA transcription around gene regulatory elements in transcription factor recruitment.

Takemata N, Ohta K.

RNA Biol. 2017 Jan 2;14(1):1-5. doi: 10.1080/15476286.2016.1248020. Epub 2016 Oct 20. Review.

20.

Characterization of enhancer function from genome-wide analyses.

Maston GA, Landt SG, Snyder M, Green MR.

Annu Rev Genomics Hum Genet. 2012;13:29-57. doi: 10.1146/annurev-genom-090711-163723. Epub 2012 Jun 11. Review.

PMID:
22703170

Supplemental Content

Support Center